4YL5

Structure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.160 
  • R-Value Observed: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii.

Abendroth, J.Lukacs, C.M.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative phosphomethylpyrimidine kinase
A
263Acinetobacter baumannii IS-123Mutation(s): 0 
Gene Names: ACINIS123_0279
Find proteins for A0A0J9X285 (Acinetobacter baumannii IS-123)
Go to UniProtKB:  A0A0J9X285
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download CCD File 
A
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.160 
  • R-Value Observed: 0.161 
  • Space Group: C 2 2 21
  • Diffraction Data DOI: 4YL5 Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.82α = 90
b = 108.1β = 90
c = 88.88γ = 90
Software Package:
Software NamePurpose
XDSdata scaling
BALBESphasing
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-04-01
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy