4YK9

Complex structure of BCL-XL and mutated BIM BH3 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Complex structure of BCL-XL and mutated BIM BH3 domain

Ha, N.C.Kim, J.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bcl-2-like protein 1
A, F
195Mus musculusMutation(s): 0 
Gene Names: Bcl2l1 (Bcl2l, Bclx)
Find proteins for Q64373 (Mus musculus)
Go to UniProtKB:  Q64373
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
BH3BIM
B, G
21N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, F
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, F
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
SEP
Query on SEP
B, G
L-PEPTIDE LINKINGC3 H8 N O6 PSER
NLG
Query on NLG
B, G
NON-POLYMERC7 H11 N O5

--

AAR
Query on AAR
B, G
L-PEPTIDE LINKINGC6 H16 N5 OARG
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.192 
  • Space Group: P 3
Unit Cell:
Length (Å)Angle (°)
a = 81.738α = 90.00
b = 81.738β = 90.00
c = 42.568γ = 120.00
Software Package:
Software NamePurpose
Cootmodel building
HKL-2000data processing
MOLREPphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-03-04 
  • Released Date: 2016-04-13 
  • Deposition Author(s): Ha, N.C., Kim, J.S.

Revision History 

  • Version 1.0: 2016-04-13
    Type: Initial release