Crystal structure of putative lipoprotein from Peptoclostridium difficile 630 (fragment)
Michalska, K., Wu, R., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uncharacterized protein | 128 | Clostridioides difficile 630 | Mutation(s): 0  Gene Names: BG47_10265 | ![]() | |
UniProt | |||||
Find proteins for Q189B5 (Clostridioides difficile (strain 630)) Explore Q189B5  Go to UniProtKB:  Q189B5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q189B5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | G [auth A], H [auth C], K [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | I [auth D] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | J [auth D] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 37.755 | α = 90 |
b = 119.501 | β = 90 |
c = 185.912 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
Auto-Rickshaw | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM094585 |