4YCR

Structure determination of an integral membrane protein at room temperature from crystals in situ


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.158 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structure determination of an integral membrane protein at room temperature from crystals in situ.

Axford, D.Foadi, J.Hu, N.J.Choudhury, H.G.Iwata, S.Beis, K.Evans, G.Alguel, Y.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1228-1237

  • DOI: https://doi.org/10.1107/S139900471500423X
  • Primary Citation of Related Structures:  
    4YCR

  • PubMed Abstract: 

    The structure determination of an integral membrane protein using synchrotron X-ray diffraction data collected at room temperature directly in vapour-diffusion crystallization plates (in situ) is demonstrated. Exposing the crystals in situ eliminates manual sample handling and, since it is performed at room temperature, removes the complication of cryoprotection and potential structural anomalies induced by sample cryocooling. Essential to the method is the ability to limit radiation damage by recording a small amount of data per sample from many samples and subsequently assembling the resulting data sets using specialized software. The validity of this procedure is established by the structure determination of Haemophilus influenza TehA at 2.3 Å resolution. The method presented offers an effective protocol for the fast and efficient determination of membrane-protein structures at room temperature using third-generation synchrotron beamlines.


  • Organizational Affiliation

    Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire OX11 0DE, England.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tellurite resistance protein TehA homolog299Haemophilus influenzae Rd KW20Mutation(s): 0 
Gene Names: tehAHI_0511
Membrane Entity: Yes 
UniProt
Find proteins for P44741 (Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd))
Explore P44741 
Go to UniProtKB:  P44741
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP44741
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.158 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.605α = 90
b = 98.605β = 90
c = 136.378γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-03
    Type: Initial release
  • Version 1.1: 2015-06-17
    Changes: Database references
  • Version 1.2: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary