4Y64

AAGlyB in complex with amino-acid analogues


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Design of Glycosyltransferase Inhibitors: Serine Analogues as Pyrophosphate Surrogates?

Wang, S.Cuesta-Seijo, J.A.Striebeck, A.Lafont, D.Palcic, M.M.Vidal, S.

(2015) Chempluschem 80: 1525-1532


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histo-blood group ABO system transferase
A
354Homo sapiensMutation(s): 0 
Gene Names: ABO
Find proteins for P16442 (Homo sapiens)
Go to Gene View: ABO
Go to UniProtKB:  P16442
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
48C
Query on 48C

Download SDF File 
Download CCD File 
A
5'-(D-alanylamino)-5'-deoxyuridine
C12 H18 N4 O6
DKBBANYKDGGYBY-LODYRLCVSA-N
 Ligand Interaction
BHE
Query on BHE

Download SDF File 
Download CCD File 
A
octyl 2-O-(6-deoxy-alpha-L-galactopyranosyl)-beta-D-galactopyranoside
H-antigen acceptor; alpha-L-Fucp-(1,2)-Beta-D-Galp-O(CH2)7CH3
C20 H38 O10
GTTDTLMUWQMDNA-ARNYJBIMSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.188 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 52.940α = 90.00
b = 150.020β = 90.00
c = 80.150γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACphasing
REFMACrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-09-16
    Type: Initial release
  • Version 1.1: 2017-08-30
    Type: Database references