4Y49

Crystal structure of yeast N-terminal acetyltransferase (ppGpp) NatE in complex with a bisubstrate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.95 Å
  • R-Value Free: 0.421 
  • R-Value Work: 0.355 
  • R-Value Observed: 0.358 

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This is version 1.0 of the entry. See complete history


Literature

Crystal structure of yeast N-terminal acetyltransferase (ppGpp) NatE in complex with a bisubstrate

Dong, J.Wang, S.York, J.D.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
N-terminal acetyltransferase A complex subunit NAT1A,
E [auth G],
I [auth M]
854Saccharomyces cerevisiaeMutation(s): 0 
UniProt
Find proteins for P12945 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP12945
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
N-terminal acetyltransferase A complex catalytic subunit ARD1B,
F [auth H],
J [auth N]
238Saccharomyces cerevisiaeMutation(s): 0 
EC: 2.3.1.88 (PDB Primary Data), 2.3.1.255 (UniProt)
UniProt
Find proteins for P07347 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP07347
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
N-terminal acetyltransferase A complex subunit NAT5C,
G [auth I],
K [auth O]
176Saccharomyces cerevisiaeMutation(s): 0 
EC: 2.3.1 (PDB Primary Data), 2.3.1.258 (UniProt)
UniProt
Find proteins for Q08689 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
ALA-ALA-ALA-ALA-ALA-ALAD [auth E],
H [auth K],
L [auth Q]
8Homo sapiensMutation(s): 0 
Gene Names: POMC
UniProt & NIH Common Fund Data Resources
Find proteins for P01189 (Homo sapiens)
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PHAROS:  P01189
GTEx:  ENSG00000115138 
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UniProt GroupP01189
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Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.95 Å
  • R-Value Free: 0.421 
  • R-Value Work: 0.355 
  • R-Value Observed: 0.358 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 111.723α = 90
b = 146.486β = 90
c = 254.107γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-13
    Type: Initial release