Download MendeleyCrystal structure of yeast N-terminal acetyltransferase (ppGpp) NatE in complex with a bisubstrate
Dong, J., Wang, S., York, J.D.To be published.
4Y49
Crystal structure of yeast N-terminal acetyltransferase (ppGpp) NatE in complex with a bisubstrate
- PDB DOI: 10.2210/pdb4Y49/pdb
- Classification: TRANSFERASE
- Organism(s): Saccharomyces cerevisiae, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-02-10 Released: 2016-07-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.95 Å
- R-Value Free: 0.421
- R-Value Work: 0.355
- R-Value Observed: 0.358
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-terminal acetyltransferase A complex subunit NAT1 | A, E [auth G], I [auth M] | 854 | Saccharomyces cerevisiae | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for P12945 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P12945 Go to UniProtKB: P12945 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P12945 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-terminal acetyltransferase A complex catalytic subunit ARD1 | B, F [auth H], J [auth N] | 238 | Saccharomyces cerevisiae | Mutation(s): 0 EC: 2.3.1.88 (PDB Primary Data), 2.3.1.255 (UniProt) |  |
UniProt | |||||
Find proteins for P07347 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P07347 Go to UniProtKB: P07347 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07347 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-terminal acetyltransferase A complex subunit NAT5 | C, G [auth I], K [auth O] | 176 | Saccharomyces cerevisiae | Mutation(s): 0 EC: 2.3.1 (PDB Primary Data), 2.3.1.258 (UniProt) |  |
UniProt | |||||
Find proteins for Q08689 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08689 Go to UniProtKB: Q08689 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q08689 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ALA-ALA-ALA-ALA-ALA-ALA | D [auth E], H [auth K], L [auth Q] | 8 | Homo sapiens | Mutation(s): 0 Gene Names: POMC |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01189 (Homo sapiens) Explore P01189 Go to UniProtKB: P01189 | |||||
PHAROS: P01189 GTEx: ENSG00000115138 | |||||
Entity Groups | |||||
| UniProt Group | P01189 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CMC Query on CMC | N [auth B], Q [auth H], T [auth N] | CARBOXYMETHYL COENZYME *A C23 H38 N7 O18 P3 S OBUOSIHPWVNVJN-GRFIIANRSA-N |  | Ligand Interaction | |
| ACO Query on ACO | O [auth C], R [auth I], U [auth O] | ACETYL COENZYME *A C23 H38 N7 O17 P3 S ZSLZBFCDCINBPY-ZSJPKINUSA-N |  | Ligand Interaction | |
| G4P Query on G4P | M [auth A], P [auth G], S [auth M] | GUANOSINE-5',3'-TETRAPHOSPHATE C10 H17 N5 O17 P4 BUFLLCUFNHESEH-UUOKFMHZSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.95 Å
- R-Value Free: 0.421
- R-Value Work: 0.355
- R-Value Observed: 0.358
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 111.723 | α = 90 |
| b = 146.486 | β = 90 |
| c = 254.107 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2015-02-10
- Released Date: 2016-07-13 Deposition Author(s): Dong, J., Wang, S., York, J.D.
Revision History (Full details and data files)
- Version 1.0: 2016-07-13
Type: Initial release
