4XUV | pdb_00004xuv

Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris

• PDB DOI: https://doi.org/10.2210/pdb4XUV/pdb

• Classification: HYDROLASE
• Organism(s): Thermothielavioides terrestris NRRL 8126
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-01-26 Released: 2015-02-11 
• Deposition Author(s): Stogios, P.J., Xu, X., Cui, H., Yim, V., Savchenko, A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.222 (Depositor), 0.224 (DCC) 
• R-Value Work: 
  0.191 (Depositor), 0.194 (DCC) 
• R-Value Observed: 
  0.192 (Depositor) 

Starting Models: experimental

Literature

Crystal structure of a glycoside hydrolase family 105 (GH105) enzyme from Thielavia terrestris

Stogios, P.J., Xu, X., Cui, H., Yim, V., Savchenko, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 84.36 kDa 
• Atom Count: 5,867 
• Modeled Residue Count: 662 
• Deposited Residue Count: 746 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycoside hydrolase family 105 protein	A, B	373	Thermothielavioides terrestris NRRL 8126	Mutation(s): 0  Gene Names: THITE_2110935
UniProt
Find proteins for G2QVG2 (Thermothielavioides terrestris (strain ATCC 38088 / NRRL 8126)) Explore G2QVG2  Go to UniProtKB:  G2QVG2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	C [auth A], D [auth B], E [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.222 (Depositor), 0.224 (DCC) 
• R-Value Work:  0.191 (Depositor), 0.194 (DCC) 
• R-Value Observed: 0.192 (Depositor) 

Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 126.258	α = 90
b = 126.258	β = 90
c = 117.307	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing
PHENIX	model building
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-02-11 
Deposition Author(s): Stogios, P.J., Xu, X., Cui, H., Yim, V., Savchenko, A.

Revision History  

• Version 1.0: 2015-02-11
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy