4XSK

Structure of PAItrap, an uPA mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of PAItrap, an uPA mutant

Gong, L.Proulle, V.Hong, Z.Lin, Z.Liu, M.Yuan, C.Lin, L.Furie, B.Flaumenhaft, R.Andreasen, P.Furie, B.Huang, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Urokinase-type plasminogen activator
U
246Homo sapiensMutation(s): 5 
Gene Names: PLAU
EC: 3.4.21.73
Find proteins for P00749 (Homo sapiens)
Go to Gene View: PLAU
Go to UniProtKB:  P00749
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
U
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
U
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PGE
Query on PGE

Download SDF File 
Download CCD File 
U
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.174 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 121.025α = 90.00
b = 121.025β = 90.00
c = 42.774γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
MOLREPmodel building
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31161130356
NFSCChina31370737
National Institutes of Health/National Heart, Lung, and Blood InstituteUnited StatesHL087203
National Institutes of Health/National Heart, Lung, and Blood InstituteUnited StatesHL095084
CAS/SFEA International Partnership Program for Creative Research TeamsChina--
NSF of Fujian ProvinceChina2012J05071

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release
  • Version 1.1: 2017-10-18
    Type: Author supporting evidence, Derived calculations