4XNN

Crystal Structure of a GH7 Family Cellobiohydrolase from Daphnia pulex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Characterization of a GH7 Family Cellobiohydrolase from Daphnia pulex

Hobdey, S.E.Ebrahim, A.Podkaminer, K.Taylor II, L.E.Beckham, G.T.Decker, S.R.Himmel, M.E.Cragg, S.M.McGeehan, J.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cellobiohydrolase CHBI
A, B
445Daphnia pulexMutation(s): 0 
Gene Names: CEL7A
EC: 3.2.1.91
Find proteins for E9G5J5 (Daphnia pulex)
Go to UniProtKB:  E9G5J5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PCA
Query on PCA
A, B
L-PEPTIDE LINKINGC5 H7 N O3GLU
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.164 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 128.290α = 90.00
b = 47.020β = 108.23
c = 173.500γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/L001926/1
DOE Bioenergy Technologies OfficeUnited States--

Revision History 

  • Version 1.0: 2016-01-27
    Type: Initial release
  • Version 2.0: 2017-08-30
    Type: Advisory, Atomic model, Author supporting evidence, Derived calculations