4XMK

Crystal structure of Fab of HIV-1 gp120 V3-specific human monoclonal antibody 2424 in complex with JR-FL V3 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.179 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Functional and Structural Characterization of Human V3-Specific Monoclonal Antibody 2424 with Neutralizing Activity against HIV-1 JRFL.

Kumar, R.Pan, R.Upadhyay, C.Mayr, L.Cohen, S.Wang, X.H.Balasubramanian, P.Nadas, A.Seaman, M.S.Zolla-Pazner, S.Gorny, M.K.Kong, X.P.Hioe, C.E.

(2015) J.Virol. 89: 9090-9102


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Light chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424
L, M, N
215N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Heavy chain of HIV-1 gp120 V3-specific human monoclonal antibody 2424
H, I, J
223N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
HIV-1 JR-FL gp120 V3 peptide
P, Q, R
11Human immunodeficiency virus type 1 group M subtype BGene Names: env
Find proteins for P05877 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P05877
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.179 Å
  • R-Value Free: 0.283 
  • R-Value Work: 0.225 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 94.952α = 90.00
b = 122.254β = 90.00
c = 140.811γ = 90.00
Software Package:
Software NamePurpose
XDSdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-01-14 
  • Released Date: 2015-07-08 
  • Deposition Author(s): Kong, X.-P., Pan, R.

Funding OrganizationCountryGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI100151
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI082274

Revision History 

  • Version 1.0: 2015-07-08
    Type: Initial release
  • Version 1.1: 2015-08-12
    Type: Database references
  • Version 1.2: 2017-05-31
    Type: Other
  • Version 1.3: 2017-09-20
    Type: Author supporting evidence