4XJ2

FerA - NADH:FMN oxidoreductase from Paracoccus denitrificans in complex with FMN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Biochemical properties and crystal structure of the flavin reductase FerA from Paracoccus denitrificans.

Sedlacek, V.Klumpler, T.Marek, J.Kucera, I.

(2016) Microbiol. Res. 188-189: 9-22


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Flavin reductase domain protein, FMN-binding protein
A
188Paracoccus denitrificans (strain Pd 1222)Mutation(s): 0 
Find proteins for A1B5I2 (Paracoccus denitrificans (strain Pd 1222))
Go to UniProtKB:  A1B5I2
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
FMNKd: 3700 nM BINDINGMOAD
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.166 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 43.920α = 90.00
b = 43.920β = 90.00
c = 154.480γ = 120.00
Software Package:
Software NamePurpose
XSCALEdata scaling
MOLREPphasing
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Regional Development FundCzech RepublicCZ.1.05/1.1.00/02.0068
GACR Czech science foundationCzech RepublicCZ.1.07/2.3.00/30.0037
GACR Czech science foundationCzech RepublicP503/12/0369

Revision History 

  • Version 1.0: 2016-01-27
    Type: Initial release
  • Version 1.1: 2016-09-21
    Type: Database references
  • Version 1.2: 2017-05-10
    Type: Database references
  • Version 1.3: 2017-05-17
    Type: Database references
  • Version 1.4: 2018-04-18
    Type: Data collection, Database references