4XIN | pdb_00004xin

X-ray Crystal Structure of an LpqH orthologue from Mycobacterium avium

• PDB DOI: https://doi.org/10.2210/pdb4XIN/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Mycobacterium avium 104
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-01-07 Released: 2015-03-04 
• Deposition Author(s): Fairman, J.W., Abendroth, J., Lorimer, D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)
• Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.195 (Depositor), 0.194 (DCC) 
• R-Value Work: 
  0.160 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.162 (Depositor) 

Literature

X-ray Crystal Structure of an LpqH orthologue from Mycobacterium avium

Fairman, J.W., Abendroth, J., Lorimer, D., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 27.15 kDa 
• Atom Count: 1,871 
• Modeled Residue Count: 228 
• Deposited Residue Count: 252 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LpqH orthologue	A, B	126	Mycobacterium avium 104	Mutation(s): 0  Gene Names: MAV_0969
UniProt
Find proteins for A0A0J9X263 (Mycobacterium avium (strain 104)) Explore A0A0J9X263  Go to UniProtKB:  A0A0J9X263

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	C [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.195 (Depositor), 0.194 (DCC) 
• R-Value Work:  0.160 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.162 (Depositor) 

Diffraction Data: https://doi.org/10.18430/M34XIN

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.03	α = 110.12
b = 37.63	β = 95.97
c = 41.96	γ = 97.08

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2015-03-04 
Deposition Author(s): Fairman, J.W., Abendroth, J., Lorimer, D., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	--

Revision History  

• Version 1.0: 2015-03-04
  Type: Initial release
  
• Version 1.1: 2017-09-06
  Changes: Author supporting evidence, Derived calculations, Source and taxonomy, Structure summary
• Version 1.2: 2017-11-22
  Changes: Refinement description
• Version 1.3: 2019-12-11
  Changes: Author supporting evidence
• Version 1.4: 2024-11-06
  Changes: Data collection, Database references, Derived calculations, Experimental preparation, Structure summary