4XD2

Horse liver alcohol dehydrogenase-NADH complex

  • Classification: OXIDOREDUCTASE
  • Organism(s): Equus caballus

  • Deposited: 2014-12-18 Released: 2015-01-14 
  • Deposition Author(s): Plapp, B.V., Baskar Raj, S., Ferraro, D.J.
  • Funding Organization(s): National Institutes of Health/National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health/National Institute of General Medical Sciences 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.177 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Structure of Horse liver alcohol dehydrogenase complexed with NADH

Plapp, B.V.Baskar Raj, S.Ferraro, D.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alcohol dehydrogenase E chain
A, B
374Equus caballusMutation(s): 0 
EC: 1.1.1.1
Find proteins for P00327 (Equus caballus)
Go to UniProtKB:  P00327
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MRD
Query on MRD

Download SDF File 
Download CCD File 
A, B
(4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
 Ligand Interaction
NAI
Query on NAI

Download SDF File 
Download CCD File 
A, B
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.198 
  • R-Value Work: 0.177 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 44.158α = 92.05
b = 50.911β = 103.05
c = 92.660γ = 109.60
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata scaling
REFMACphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute on Alcohol Abuse and AlcoholismUnited StatesAA00279
National Institutes of Health/National Institute of General Medical SciencesUnited StatesT32 GM008365

Revision History 

  • Version 1.0: 2015-01-14
    Type: Initial release
  • Version 2.0: 2017-11-22
    Type: Advisory, Atomic model, Author supporting evidence, Derived calculations, Source and taxonomy