Download MendeleyCrystal Structure of Dimeric Human Peroxiredoxin-1 C83S Mutant
Cho, K.J., Park, Y., Khan, T.G., Lee, J.-H., Kim, S., Seok, J.H., Chung, Y.B., Cho, A.E., Choi, Y., Chang, T.-S., Kim, K.H.(2015) Bull Korean Chem Soc 36: 1543-1545
4XCS
Human peroxiredoxin-1 C83S mutant
- DOI: 10.2210/pdb4XCS/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-12-18 Released: 2016-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.222
- R-Value Work: 0.176
- R-Value Observed: 0.178
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peroxiredoxin-1 | A, B, C, D, E, F | 219 | Homo sapiens | Mutation(s): 1 Gene Names: PRDX1, PAGA, PAGB, TDPX2 EC: 1.11.1.15 (PDB Primary Data), 1.11.1.24 (UniProt) |  |
Find proteins for Q06830 (Homo sapiens) Explore Q06830 Go to UniProtKB: Q06830 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q06830 GTEx: ENSG00000117450 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CPS Query on CPS | A, D, E | 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE C32 H58 N2 O7 S UMCMPZBLKLEWAF-BCTGSCMUSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A, C, F | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.222
- R-Value Work: 0.176
- R-Value Observed: 0.178
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 138.788 | α = 90 |
| b = 80.128 | β = 89.99 |
| c = 125.618 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Deposited Date: 2014-12-18
- Released Date: 2016-01-13 Deposition Author(s): Cho, K.J., Lee, J.-H., Khan, T.G., Park, Y., Cho, A., Chang, T.-S., Kim, K.H.
Revision History (Full details and data files)
- Version 1.0: 2016-01-13
Type: Initial release - Version 1.1: 2016-10-05
Changes: Database references
