4XCS

Human peroxiredoxin-1 C83S mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure of Dimeric Human Peroxiredoxin-1 C83S Mutant

Cho, K.J.Park, Y.Khan, T.G.Lee, J.-H.Kim, S.Seok, J.H.Chung, Y.B.Cho, A.E.Choi, Y.Chang, T.-S.Kim, K.H.

(2015) Bull.Korean Chem.Soc. 36: 1543-1545


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxiredoxin-1
A, B, C, D, E, F
219Homo sapiensMutation(s): 1 
Gene Names: PRDX1 (PAGA, PAGB, TDPX2)
EC: 1.11.1.15
Find proteins for Q06830 (Homo sapiens)
Go to Gene View: PRDX1
Go to UniProtKB:  Q06830
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, C, F
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CPS
Query on CPS

Download SDF File 
Download CCD File 
A, D, E
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
CHAPS
C32 H58 N2 O7 S
UMCMPZBLKLEWAF-BCTGSCMUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.176 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 138.788α = 90.00
b = 80.128β = 89.99
c = 125.618γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PDB_EXTRACTdata extraction
HKL-2000data scaling
MOLREPphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-01-13
    Type: Initial release
  • Version 1.1: 2016-10-05
    Type: Database references