Biological Assembly 1  

 3D View: Structure | Electron Density

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Global Symmetry: Cyclic - C2  (3D View)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 34709.79 
• Atom Count: 2278 
• Residue Count: 320 
• Unique protein chains: 1

4XA8

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2

• DOI: 10.2210/pdb4XA8/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
• Expression System: Escherichia coli BL21(DE3)


• Deposited: 2014-12-12 Released: 2015-01-14 
• Deposition Author(s): Handing, K.B., Gasiorowska, O.A., Shabalin, I.G., Cymborowski, M.T., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)
• Funding Organization(s): National Institutes of Health 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.9 Å
• R-Value Free: 0.209 
• R-Value Work: 0.163 

Literature

Crystal structure of D-isomer specific 2-hydroxyacid dehydrogenase from Xanthobacter autotrophicus Py2.

Handing, K.B., Gasiorowska, O.A., Shabalin, I.G., Cymborowski, M.T., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding	A	320	Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)	Mutation(s): 0
Find proteins for A7IIH0 (Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)) Go to UniProtKB:  A7IIH0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.9 Å
• R-Value Free: 0.209 
• R-Value Work: 0.163 
• Space Group: C 2 2 2₁
• Diffraction Data DOI: 
  10.18430/M3JG60 Protein Diffraction

Unit Cell:

Length (Å)	Angle (°)
a = 58.762	α = 90.00
b = 63.714	β = 90.00
c = 154.967	γ = 90.00

Software Package:

Software Name	Purpose
HKL-3000	data scaling
MOLREP	phasing
HKL-3000	phasing
BLU-MAX	data collection
REFMAC	refinement
PDB_EXTRACT	data extraction
Coot	model building
HKL-3000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2014-12-12 
• Released Date: 2015-01-14 
• Deposition Author(s): Handing, K.B., Gasiorowska, O.A., Shabalin, I.G., Cymborowski, M.T., Bonanno, J., Almo, S.C., Minor, W., New York Structural Genomics Research Consortium (NYSGRC)

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Funding Organization	Location	Grant Number
National Institutes of Health	United States	--

Revision History 

• Version 1.0: 2015-01-14
  Type: Initial release
• Version 1.1: 2015-09-30
  Type: Data collection
• Version 1.2: 2017-09-20
  Type: Author supporting evidence, Derived calculations