4X7C

Crystal structure of Saga-2006 GII.4 P domain in complex with Nano-85


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Nanobody binding to a conserved epitope promotes norovirus particle disassembly.

Koromyslova, A.D.Hansman, G.S.

(2015) J.Virol. 89: 2718-2730


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VP1
A, B
307Norovirus Hu/GII-4/Saga1/2006/JPMutation(s): 0 
Find proteins for B5BTR4 (Norovirus Hu/GII-4/Saga1/2006/JP)
Go to UniProtKB:  B5BTR4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Nano-85 Nanobody
C, D
126N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.218 
  • R-Value Work: 0.166 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.150α = 90.00
b = 125.230β = 90.00
c = 133.040γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-31
    Type: Initial release
  • Version 1.1: 2015-01-14
    Type: Database references
  • Version 1.2: 2015-02-18
    Type: Database references