4X2E | pdb_00004x2e

Clostridium difficile wild type Fic protein

PDB DOI: https://doi.org/10.2210/pdb4X2E/pdb

Classification: TRANSFERASE
Organism(s): Clostridioides difficile R20291
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2014-11-26 Released: 2015-12-23
Deposition Author(s): Jorgensen, R., Dedic, E.
Funding Organization(s): Danish Council for Independent Research

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free:
0.286 (Depositor), 0.290 (DCC)
R-Value Work:
0.243 (Depositor), 0.250 (DCC)
R-Value Observed:
0.245 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of wild type Clostridium difficile Fic_0569 at 3.1 Angstroms resolution

Jorgensen, R., Dedic, E., Alsarraf, H., Welner, D., van Leeuwen, H.C., Oestergaard, O.

To be published.

Macromolecule Content

Total Structure Weight: 109.48 kDa
Atom Count: 6,561
Modeled Residue Count: 797
Deposited Residue Count: 940
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fic family protein putative filamentation induced by cAMP protein	A, B, C, D	235	Clostridioides difficile R20291	Mutation(s): 0 Gene Names: CDR20291_0569
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.10 Å
R-Value Free: 0.286 (Depositor), 0.290 (DCC)
R-Value Work: 0.243 (Depositor), 0.250 (DCC)
R-Value Observed: 0.245 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.42	α = 90
b = 157.37	β = 90
c = 262.69	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
PHASER	phasing
PDB_EXTRACT	data extraction
XSCALE	data scaling

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2015-12-23

Deposition Author(s):

Funding Organization	Location	Grant Number
Danish Council for Independent Research	Denmark	11-104831/FSS

Revision History (Full details and data files)

Version 1.0: 2015-12-23
Type: Initial release
Version 1.1: 2024-01-10
Changes: Author supporting evidence, Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.