4WXT | pdb_00004wxt

X-ray crystal structure of thioredoxin from Mycobacterium avium

PDB DOI: https://doi.org/10.2210/pdb4WXT/pdb

Classification: HYDROLASE
Organism(s): Mycobacterium avium subsp. hominissuis 3388
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-11-14 Released: 2014-11-26
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free:
0.177 (Depositor), 0.179 (DCC)
R-Value Work:
0.157 (Depositor), 0.158 (DCC)
R-Value Observed:
0.158 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

X-ray crystal structure of thioredoxin from Mycobacterium avium

Lukacs, C.M., Arakaki, T., Don Lorimer, D.D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 13.52 kDa
Atom Count: 968
Modeled Residue Count: 108
Deposited Residue Count: 125
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin	A	125	Mycobacterium avium subsp. hominissuis 3388	Mutation(s): 0 Gene Names: MAV3388_24025
UniProt
Find proteins for A0A067HWN0 (Mycobacterium avium subsp. hominissuis 3388) Explore A0A067HWN0 Go to UniProtKB: A0A067HWN0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A067HWN0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.20 Å
R-Value Free: 0.177 (Depositor), 0.179 (DCC)
R-Value Work: 0.157 (Depositor), 0.158 (DCC)
R-Value Observed: 0.158 (Depositor)

Diffraction Data:

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 26.07	α = 82.64
b = 29.86	β = 87.64
c = 31.08	γ = 66.84

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2014-11-26

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2014-11-26
Type: Initial release
Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description, Source and taxonomy
Version 1.2: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.