4WU7

HLA-A24 in complex with HIV-1 Nef134-8(2F)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.297 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of Nef134-8 epitope presented by HLA-A24

Kato, J.Kawana, A.Shimizu, A.Zhu, D.Han, C.Nakamura, H.Koibuchi, T.Sato, Y.Yamagata, A.Fukai, S.Gao, G.F.Brumme, Z.L.Iwamoto, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, A-24 alpha chain
A, D
275Homo sapiensMutation(s): 0 
Gene Names: HLA-A (HLAA)
Find proteins for P05534 (Homo sapiens)
Go to Gene View: HLA-A
Go to UniProtKB:  P05534
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B, E
99Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
8-Mer peptide from Protein Nef
C, F
8Human immunodeficiency virus type 1 group M subtype BMutation(s): 0 
Gene Names: nef
Find proteins for P04601 (Human immunodeficiency virus type 1 group M subtype B)
Go to UniProtKB:  P04601
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.297 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.222 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 67.714α = 90.00
b = 87.020β = 90.00
c = 152.227γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
MOLREPmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-05-06
    Type: Initial release