4WSI | pdb_00004wsi

Crystal Structure of PALS1/Crb complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 
    0.235 (Depositor), 0.262 (DCC) 
  • R-Value Work: 
    0.207 (Depositor) 
  • R-Value Observed: 
    0.208 (Depositor) 

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structure of Crumbs tail in complex with the PALS1 PDZ-SH3-GK tandem reveals a highly specific assembly mechanism for the apical Crumbs complex.

Li, Y.Wei, Z.Yan, Y.Wan, Q.Du, Q.Zhang, M.

(2014) Proc Natl Acad Sci U S A 111: 17444-17449

  • DOI: https://doi.org/10.1073/pnas.1416515111
  • Primary Citation Related Structures: 
    4WSI

  • PubMed Abstract: 

    The Crumbs (Crb) complex, formed by Crb, PALS1, and PATJ, is evolutionarily conserved in metazoans and acts as a master cell-growth and -polarity regulator at the apical membranes in polarized epithelia. Crb intracellular functions, including its direct binding to PALS1, are mediated by Crb's highly conserved 37-residue cytoplasmic tail. However, the mechanistic basis governing the highly specific Crb-PALS1 complex formation is unclear, as reported interaction between the Crb tail (Crb-CT) and PALS1 PSD-95/DLG/ZO-1 (PDZ) domain is weak and promiscuous. Here we have discovered that the PDZ-Src homolgy 3 (SH3)-Guanylate kinase (GK) tandem of PALS1 binds to Crb-CT with a dissociation constant of 70 nM, which is ∼ 100-fold stronger than the PALS1 PDZ-Crb-CT interaction. The crystal structure of the PALS1 PDZ-SH3-GK-Crb-CT complex reveals that PDZ-SH3-GK forms a structural supramodule with all three domains contributing to the tight binding to Crb. Mutations disrupting the tertiary interactions of the PDZ-SH3-GK supramodule weaken the PALS1-Crb interaction and compromise PALS1-mediated polarity establishment in Madin-Darby canine kidney (MDCK) cysts. We further show that specific target binding of other members of membrane-associated guanylate kinases (MAGUKs) (e.g., CASK binding to neurexin) also requires the presence of their PDZ-SH3-GK tandems.


  • Organizational Affiliation
    • Division of Life Science, State Key Laboratory of Molecular Neuroscience and.

Macromolecule Content 

  • Total Structure Weight: 99.44 kDa 
  • Atom Count: 6,042 
  • Modeled Residue Count: 767 
  • Deposited Residue Count: 874 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
MAGUK p55 subfamily member 5
A, B
394Homo sapiensMutation(s): 0 
Gene Names: MPP5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N3R9 (Homo sapiens)
Explore Q8N3R9 
Go to UniProtKB:  Q8N3R9
PHAROS:  Q8N3R9
GTEx:  ENSG00000072415 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N3R9
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein crumbsC [auth X],
D [auth Y]
43Drosophila melanogasterMutation(s): 0 
Gene Names: crbCG6383
UniProt
Find proteins for P10040 (Drosophila melanogaster)
Explore P10040 
Go to UniProtKB:  P10040
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10040
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free:  0.235 (Depositor), 0.262 (DCC) 
  • R-Value Work:  0.207 (Depositor) 
  • R-Value Observed: 0.208 (Depositor) 
Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 111.928α = 90
b = 111.928β = 90
c = 223.065γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
HKL-2000data processing
PHENIXphasing
Cootmodel building
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-11-26
    Type: Initial release
  • Version 1.1: 2015-02-11
    Changes: Database references
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references, Derived calculations, Source and taxonomy