4WRK

The 3D structure of D95N mutant DUTPase from phage phi11 of S. aureus reveals the molecular details for the coordination of a structural Mg(II) ion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.208 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The 3D structure of D95N mutant DUTPase from phage phi11 of S. aureus reveals the molecular details for the coordination of a structural Mg(II) ion

Bendes, A.A.Leveles, I.Vertessy, B.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DUTPase
A, B, C, D, E, F
169Staphylococcus phage phi11Mutation(s): 1 
Find proteins for Q8SDV3 (Staphylococcus phage phi11)
Go to UniProtKB:  Q8SDV3
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DUP
Query on DUP

Download SDF File 
Download CCD File 
A, B, C, D, F
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
C9 H16 N3 O13 P3
XZLLMTSKYYYJLH-SHYZEUOFSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.208 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 108.420α = 90.00
b = 108.420β = 90.00
c = 167.050γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PHENIXrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
ungarian Scientific Research Fund OTKAHungaryNK 84008
ungarian Scientific Research Fund OTKAHungaryK109486
Baross Program of the New Hungary Development PlanHungary3DSTRUCT, MFB-00266/2010 REG-KM-09-1-2009-005
Hungarian Academy of SciencesHungaryTTK IF-28/201
Hungarian Academy of SciencesHungaryMedinProt program
uropean Commission FP7 Biostruct-X project283570

Revision History 

  • Version 1.0: 2015-12-23
    Type: Initial release