4WQY

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.

Lin, J.Gagnon, M.G.Bulkley, D.Steitz, T.A.

(2015) Cell 160: 219-227

  • DOI: 10.1016/j.cell.2014.11.049
  • Primary Citation of Related Structures:  4WPO, 4WQF, 4WQU

  • PubMed Abstract: 
  • The universally conserved GTPase elongation factor G (EF-G) catalyzes the translocation of tRNA and mRNA on the ribosome after peptide bond formation. Despite numerous studies suggesting that EF-G undergoes extensive conformational rearrangements dur ...

    The universally conserved GTPase elongation factor G (EF-G) catalyzes the translocation of tRNA and mRNA on the ribosome after peptide bond formation. Despite numerous studies suggesting that EF-G undergoes extensive conformational rearrangements during translocation, high-resolution structures exist for essentially only one conformation of EF-G in complex with the ribosome. Here, we report four atomic-resolution crystal structures of EF-G bound to the ribosome programmed in the pre- and posttranslocational states and to the ribosome trapped by the antibiotic dityromycin. We observe a previously unseen conformation of EF-G in the pretranslocation complex, which is independently captured by dityromycin on the ribosome. Our structures provide insights into the conformational space that EF-G samples on the ribosome and reveal that tRNA translocation on the ribosome is facilitated by a structural transition of EF-G from a compact to an elongated conformation, which can be prevented by the antibiotic dityromycin.


    Organizational Affiliation

    Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L1
AC, CC
228Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplA
Find proteins for Q5SLP7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLP7
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L2
AD, CD
276Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplB
Find proteins for P60405 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60405
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L3
AE, CE
206Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplC
Find proteins for Q5SHN8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN8
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L4
AF, CF
210Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplD
Find proteins for Q5SHN9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN9
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L5
AG, CG
182Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplE
Find proteins for Q5SHQ0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ0
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L6
AH, CH
180Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplF
Find proteins for P0DOY8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P0DOY8
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L10
AK, CK
173Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplJ
Find proteins for Q8VVE3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q8VVE3
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L11
AL, CL
147Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplK
Find proteins for Q5SLP6 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLP6
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L13
AN, CN
140Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplM
Find proteins for P60488 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60488
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L14
AO, CO
122Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplN
Find proteins for Q5SHP8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP8
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L15
AP, CP
150Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplO
Find proteins for Q5SHQ7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ7
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L16
AQ, CQ
141Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplP
Find proteins for P60489 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60489
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L17
AR, CR
118Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplQ (rpl17)
Find proteins for Q9Z9H5 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q9Z9H5
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L18
AS, CS
112Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplR
Find proteins for Q5SHQ4 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ4
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L19
AT, CT
146Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplS
Find proteins for P60490 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60490
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L20
AU, CU
118Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplT
Find proteins for P60491 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60491
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L21
AV, CV
101Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplU
Find proteins for P60492 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60492
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L22
AW, CW
113Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplV
Find proteins for Q5SHP3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP3
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L23
AX, CX
96Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplW
Find proteins for Q5SHP0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP0
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L24
AY, CY
110Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplX
Find proteins for Q5SHP9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP9
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L25
AZ, CZ
206Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplY (rpl25, rptL5)
Find proteins for Q5SHZ1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHZ1
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L27
A0, C0
85Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmA
Find proteins for P60493 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60493
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L28
A1, C1
98Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmB
Find proteins for P60494 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60494
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L29
A2, C2
72Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmC
Find proteins for Q5SHP6 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP6
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L30
A3, C3
60Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmD
Find proteins for Q5SHQ6 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ6
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L31
A4, C4
71Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmE
Find proteins for Q5SJE1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SJE1
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L32
A5, C5
60Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmF (rpl32)
Find proteins for P80339 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80339
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L33
A6, C6
54Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmG (rpl33)
Find proteins for P35871 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P35871
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L34
A7, C7
49Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmH (rpl34)
Find proteins for P80340 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80340
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L35
A8, C8
65Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmI
Find proteins for Q5SKU1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SKU1
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L36
A9, C9
37Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpmJ
Find proteins for Q5SHR2 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHR2
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S2
BB, DB
256Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsB (rps2)
Find proteins for P80371 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80371
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S3
BC, DC
239Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsC (rps3)
Find proteins for P80372 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80372
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S4
BD, DD
209Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsD (rps4)
Find proteins for P80373 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80373
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S5
BE, DE
162Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsE
Find proteins for Q5SHQ5 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ5
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S6
BF, DF
101Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsF
Find proteins for Q5SLP8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLP8
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S7
BG, DG
156Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsG (rps7)
Find proteins for P17291 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P17291
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S8
BH, DH
138Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsH
Find proteins for P0DOY9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P0DOY9
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S9
BI, DI
128Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsI (rps9)
Find proteins for P80374 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80374
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S10
BJ, DJ
105Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsJ
Find proteins for Q5SHN7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN7
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S11
BK, DK
129Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsK (rps11)
Find proteins for P80376 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80376
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S12
BL, DL
132Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsL
Find proteins for Q5SHN3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN3
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S13
BM, DM
126Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsM (rps13)
Find proteins for P80377 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80377
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S14 type Z
BN, DN
61Thermus aquaticusGene Names: rpsZ (rpsN)
Find proteins for A0A0N0BLP2 (Thermus aquaticus)
Go to UniProtKB:  A0A0N0BLP2
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S15
BO, DO
89Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsO
Find proteins for Q5SJ76 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SJ76
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S16
BP, DP
88Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsP
Find proteins for Q5SJH3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SJH3
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S17
BQ, DQ
105Thermus aquaticusGene Names: rpsQ
Find proteins for A0A0N0BLS5 (Thermus aquaticus)
Go to UniProtKB:  A0A0N0BLS5
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S18
BR, DR
88Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsR
Find proteins for Q5SLQ0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLQ0
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S19
BS, DS
93Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsS
Find proteins for Q5SHP2 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP2
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S20
BT, DT
106Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsT (rps20)
Find proteins for P80380 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80380
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein Thx
BU, DU
27Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rpsU
Find proteins for Q5SIH3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SIH3
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L9,Elongation factor G
BZ, DZ
758Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Gene Names: rplI, fusA (fus)
Find proteins for Q5SLQ1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLQ1
Find proteins for Q5SHN5 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN5
Entity ID: 1
MoleculeChainsLengthOrganism
23S Ribosomal RNAAA,CA2915Thermus thermophilus HB8
Entity ID: 2
MoleculeChainsLengthOrganism
5S Ribosomal RNAAB,CB121Thermus thermophilus HB8
Entity ID: 34
MoleculeChainsLengthOrganism
16S Ribosomal RNABA,DA1521Thermus thermophilus HB8
Entity ID: 55
MoleculeChainsLengthOrganism
mRNABV,DV24synthetic construct
Entity ID: 56
MoleculeChainsLengthOrganism
P-site tRNABX,DX77Escherichia coli str. K-12 substr. MC4100
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
AA
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
GDP
Query on GDP

Download SDF File 
Download CCD File 
BZ, DZ
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
SF4
Query on SF4

Download SDF File 
Download CCD File 
BD, DD
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
ZN
Query on ZN

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Download CCD File 
A4, A5, A6, A9, AY, BN, C4, C5, C6, C9, CY, DN
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A0, A1, A2, A4, A5, A6, A7, A8, A9, AA, AB, AD, AE, AF, AG, AH, AN, AO, AP, AQ, AR, AU, AV, AW, AX, AZ, BA, BB, BD, BE, BF, BK, BL, BN, BT, BV, BX, BZ, C0, C1, C3, C7, C8, CA, CB, CD, CE, CF, CG, CN, CO, CQ, CR, CU, CV, CY, DA, DD, DE, DF, DJ, DK, DL, DT, DZ
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  4 Unique
IDChainsTypeFormula2D DiagramParent
PSU
Query on PSU
BX, DX
RNA LINKINGC9 H13 N2 O9 PU
5MC
Query on 5MC
BX, DX
RNA LINKINGC10 H16 N3 O8 PC
4SU
Query on 4SU
BX, DX
RNA LINKINGC9 H13 N2 O8 P SU
5MU
Query on 5MU
BX, DX
RNA LINKINGC10 H15 N2 O9 PU
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.221 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 209.480α = 90.00
b = 448.890β = 90.00
c = 622.840γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement
PHASERphasing
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-01-28
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Advisory, Derived calculations, Refinement description, Source and taxonomy, Structure summary