Download MendeleyCrystal Structure of Mtb PEPCK in complex with GDP and metals
Kim, H.L., Kriger, I.V., Sacchettini, J.C.To be published.
4WOU
Crystal Structure of Mtb PEPCK in complex with GDP and metals
- PDB DOI: https://doi.org/10.2210/pdb4WOU/pdb
- Classification: LYASE,TRANSFERASE
- Organism(s): Mycobacterium tuberculosis H37Ra
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-10-16 Released: 2015-11-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.12 Å
- R-Value Free: 0.211
- R-Value Work: 0.177
- R-Value Observed: 0.179
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoenolpyruvate carboxykinase [GTP] | 622 | Mycobacterium tuberculosis H37Ra | Mutation(s): 0 Gene Names: pckG, MRA_0219 EC: 4.1.1.32 |  | |
UniProt | |||||
Find proteins for A5TYT6 (Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)) Explore A5TYT6 Go to UniProtKB: A5TYT6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5TYT6 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP Query on GDP | B [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| PO4 Query on PO4 | F [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | E [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| MN Query on MN | D [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.12 Å
- R-Value Free: 0.211
- R-Value Work: 0.177
- R-Value Observed: 0.179
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.316 | α = 90 |
| b = 125.172 | β = 90 |
| c = 122.147 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| MOLREP | phasing |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| d*TREK | data scaling |
Entry History
Deposition Data
- Released Date: 2015-11-04 Deposition Author(s): Kim, H.L., Sacchettini, J.C.
Revision History (Full details and data files)
- Version 1.0: 2015-11-04
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations
