4WOG | pdb_00004wog

Crystal Structure of Frutalin from Artocarpus incisa

PDB DOI: https://doi.org/10.2210/pdb4WOG/pdb

Classification: SUGAR BINDING PROTEIN
Organism(s): Artocarpus
Mutation(s): No

Deposited: 2014-10-15 Released: 2015-10-28
Deposition Author(s): Pereira, H.M., Moreira, A.C.O.M., Vieira Neto, A.E., Moreno, F.B.M.B., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å
R-Value Free:
0.203 (Depositor), 0.203 (DCC)
R-Value Work:
0.161 (Depositor), 0.163 (DCC)
R-Value Observed:
0.163 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of Frutalin from Artocarpus incisa

Pereira, H.M., Moreira, A.C.O.M., Vieira Neto, A.E., Moreno, F.B.M.B., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.

To be published.

Macromolecule Content

Total Structure Weight: 67.95 kDa
Atom Count: 5,370
Modeled Residue Count: 602
Deposited Residue Count: 628
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Frutalin	A, B, C, D	157	Artocarpus	Mutation(s): 0
UniProt
Find proteins for A0A0R4I968 (Artocarpus) Explore A0A0R4I968 Go to UniProtKB: A0A0R4I968
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0R4I968
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å
R-Value Free: 0.203 (Depositor), 0.203 (DCC)
R-Value Work: 0.161 (Depositor), 0.163 (DCC)
R-Value Observed: 0.163 (Depositor)

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 76.17	α = 90
b = 74.36	β = 96.57
c = 118.986	γ = 90

Software Package:

Software Name	Purpose
d*TREK	data scaling
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-10-28

Deposition Author(s):

Moreira, A.C.O.M.

Vieira Neto, A.E.

Moreno, F.B.M.B.

Grangeiro, T.B.

Revision History (Full details and data files)

Version 1.0: 2015-10-28
Type: Initial release
Version 1.1: 2017-09-27
Changes: Data collection, Derived calculations, Refinement description
Version 1.2: 2023-09-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.