4WN5

Crystal structure of the C-terminal Per-Arnt-Sim (PASb) of human HIF-3alpha9 bound to 18:1-1-monoacylglycerol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.122 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Unsaturated fatty acids as high-affinity ligands of the C-terminal Per-ARNT-Sim domain from the Hypoxia-inducible factor 3alpha

Fala, A.M.Oliveira, J.F.Adamoski, D.Aricetti, J.A.Dias, M.M.Dias, M.V.B.Sforca, M.L.Lopes-de-Oliveira, P.S.Rocco, S.A.Caldana, C.Dias, S.M.G.Ambrosio, A.L.B.

(2015) Sci.Rep. 5: 12698


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hypoxia-inducible factor 3-alpha
A, B
115Homo sapiensMutation(s): 0 
Gene Names: HIF3A (BHLHE17, MOP7, PASD7)
Find proteins for Q9Y2N7 (Homo sapiens)
Go to Gene View: HIF3A
Go to UniProtKB:  Q9Y2N7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
P6G
Query on P6G

Download SDF File 
Download CCD File 
A, B
HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
 Ligand Interaction
MVC
Query on MVC

Download SDF File 
Download CCD File 
A, B
MONOVACCENIN
11.7 MAG
C21 H40 O4
KJHYUSLWTPMFTN-WHXUGTBJSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.122 
  • Space Group: P 21 2 21
Unit Cell:
Length (Å)Angle (°)
a = 52.650α = 90.00
b = 53.890β = 90.00
c = 67.790γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
FAPESPBrazil2012/14298-9
FAPESPBrazil2009/10875-9
FAPESPBrazil2010/13739-6
FAPESPBrazil2014/04927-4

Revision History 

  • Version 1.0: 2015-08-05
    Type: Initial release
  • Version 1.1: 2018-03-07
    Type: Advisory, Data collection, Derived calculations