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Download EndnoteCrystal structure of Saccharomyces cerevisiae OMP synthase in complex with PRP(NH)P
Bang, M.B., Molich, U., Hansen, M.R., Grubmeyer, C., Harris, P.To be published.
4WN3
Crystal structure of Saccharomyces cerevisiae OMP synthase in complex with PRP(NH)P
- DOI: 10.2210/pdb4WN3/pdb
- Classification: TRANSFERASE
- Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- Expression System: Escherichia coli
- Deposited: 2014-10-10 Released: 2015-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.238
- R-Value Work: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Orotate phosphoribosyltransferase 1 | A | 232 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Mutation(s): 0 Gene Names: URA5 (PYR5) EC: 2.4.2.10 |
Find proteins for P13298 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to UniProtKB: P13298 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3R3 Query on 3R3 | A | [[[(2R,3R,4S,5R)-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid C5 H14 N O13 P3 FCRMTSGXHCKCEX-TXICZTDVSA-N |  | Ligand Interaction | |
| MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.238
- R-Value Work: 0.201
- Space Group: P 43 21 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 62.010 | α = 90.00 |
| b = 62.010 | β = 90.00 |
| c = 132.220 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| Coot | model building |
| MOLREP | phasing |
| REFMAC | refinement |
| XSCALE | data scaling |
Entry History
Deposition Data
- Deposited Date: 2014-10-10
- Released Date: 2015-12-23
- Deposition Author(s): Bang, M.B., Molich, U., Hansen, M.R., Grubmeyer, C., Harris, P.
Revision History
- Version 1.0: 2015-12-23
Type: Initial release - Version 1.1: 2018-01-17
Type: Data collection
