4WKZ | pdb_00004wkz

Complex of autonomous ScaG cohesin CohG and X-doc domains

PDB DOI: https://doi.org/10.2210/pdb4WKZ/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Ruminococcus flavefaciens FD-1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-10-05 Released: 2015-12-23
Deposition Author(s): Voronov-Goldman, M., Lamed, R., Bayer, E.A., Yaniv, O., Shimon, L.J.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free:
0.223 (Depositor), 0.231 (DCC)
R-Value Work:
0.179 (Depositor), 0.187 (DCC)
R-Value Observed:
0.181 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4WKZ

This is version 1.1 of the entry. See complete history.

Literature

Complex of autonomous ScaG cohesin CohG and X-doc domains

Voronov-Goldman, M., Lamed, R., Bayer, E.A., Yaniv, O., Shimon, L.J.W.

To be published.

Macromolecule Content

Total Structure Weight: 47.85 kDa
Atom Count: 3,626
Modeled Residue Count: 415
Deposited Residue Count: 434
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative cellulose-binding protein	A	243	Ruminococcus flavefaciens FD-1	Mutation(s): 0 Gene Names: cttA
UniProt
Find proteins for A0AEF5 (Ruminococcus flavefaciens) Explore A0AEF5 Go to UniProtKB: A0AEF5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0AEF5
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Autonomous cohesin	B	191	Ruminococcus flavefaciens FD-1	Mutation(s): 0
UniProt
Find proteins for W5IDC3 (Ruminococcus flavefaciens) Explore W5IDC3 Go to UniProtKB: W5IDC3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	W5IDC3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NO3 Query on NO3 Download:Ideal Coordinates CCD File SDF format, chain G [auth B] MOL2 format, chain G [auth B] mmCIF format, chain G [auth B]	G [auth B]	NITRATE ION N O₃ NHNBFGGVMKEFGY-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Interactions & Density Focus chain G [auth B]
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain F [auth B] SDF format, chain D [auth A] MOL2 format, chain F [auth B] MOL2 format, chain D [auth A] mmCIF format, chain F [auth B] mmCIF format, chain D [auth A]	D [auth A], F [auth B]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain D [auth A] Focus chain F [auth B] Interactions & Density Focus chain D [auth A] Focus chain F [auth B]
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain C [auth A] MOL2 format, chain E [auth A] MOL2 format, chain C [auth A] mmCIF format, chain E [auth A] mmCIF format, chain C [auth A]	C [auth A], E [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth A] Interactions & Density Focus chain C [auth A] Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.79 Å
R-Value Free: 0.223 (Depositor), 0.231 (DCC)
R-Value Work: 0.179 (Depositor), 0.187 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 74.029	α = 90
b = 211.781	β = 90
c = 36.666	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-12-23

Deposition Author(s):

Voronov-Goldman, M.

Revision History (Full details and data files)

Version 1.0: 2015-12-23
Type: Initial release
Version 1.1: 2024-05-08
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.