Download MendeleyCrystal structure of apo-PEPCK from Mycobacterium tuberculosis with glycerol
Kim, H.L., Sacchettini, J.C.To be published.
4WIE
Crystal structure of apo-PEPCK from Mycobacterium tuberculosis with glycerol
- PDB DOI: 10.2210/pdb4WIE/pdb
- Classification: LYASE,TRANSFERASE
- Organism(s): Mycobacterium tuberculosis H37Ra
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-09-25 Released: 2014-10-22
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.18 Å
- R-Value Free: 0.191
- R-Value Work: 0.138
- R-Value Observed: 0.141
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoenolpyruvate carboxykinase [GTP] | A | 622 | Mycobacterium tuberculosis H37Ra | Mutation(s): 0 Gene Names: pckG, MRA_0219 EC: 4.1.1.32 |  |
UniProt | |||||
Find proteins for A5TYT6 (Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra)) Explore A5TYT6 Go to UniProtKB: A5TYT6 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A5TYT6 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| MN Query on MN | B [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.18 Å
- R-Value Free: 0.191
- R-Value Work: 0.138
- R-Value Observed: 0.141
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.958 | α = 90 |
| b = 122.564 | β = 117 |
| c = 64.555 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| PHENIX | phasing |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History & Funding Information
Deposition Data
- Released Date: 2014-10-22 Deposition Author(s): Kim, H.L., Sacchettini, J.C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2014-10-22
Type: Initial release - Version 1.1: 2014-10-29
Changes: Other - Version 1.2: 2015-02-04
Changes: Derived calculations - Version 1.3: 2017-11-22
Changes: Derived calculations, Other, Refinement description, Source and taxonomy - Version 1.4: 2019-12-04
Changes: Author supporting evidence
