4WHW

Direct photocapture of bromodomains using tropolone chemical probes


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.345 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Direct photocapture of bromodomains using tropolone chemical probes

Hett, E.C.Piatnitski Chekler, E.L.Basak, A.Bonin, P.D.Denny, R.A.Flick, A.C.Geoghegan, K.F.Liu, S.Pletcher, M.T.Robinson, R.P.Sahasrabudhe, P.Salter, S.Stock, I.A.Jones, L.H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 4
A
127Homo sapiensMutation(s): 0 
Gene Names: BRD4 (HUNK1)
Find proteins for O60885 (Homo sapiens)
Go to Gene View: BRD4
Go to UniProtKB:  O60885
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
3OT
Query on 3OT

Download SDF File 
Download CCD File 
A
2-methoxy-4-{1-[2-(morpholin-4-yl)ethyl]-2-(2-phenylethyl)-1H-benzimidazol-5-yl}cyclohepta-2,4,6-trien-1-one
C29 H31 N3 O3
ZSTNBLSPAMZIQD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.345 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.180 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 39.830α = 90.00
b = 50.591β = 90.00
c = 57.468γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-10-28
    Type: Initial release