4WFO

manganese-substituted soybean lipoxygenase-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.14 Å
  • R-Value Free: 0.128 
  • R-Value Work: 0.108 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Direct detection of active-site geometries in soybean lipoxygenase-1 by ENDOR

Carr, C.A.M.Horitani, M.Offenbacher, A.R.Knitz, M.W.Klinman, J.P.Hoffman, B.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Seed linoleate 13S-lipoxygenase-1
A
858Glycine maxMutation(s): 0 
Gene Names: LOX1.1 (LOX1)
EC: 1.13.11.12
Find proteins for P08170 (Glycine max)
Go to UniProtKB:  P08170
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.14 Å
  • R-Value Free: 0.128 
  • R-Value Work: 0.108 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 48.123α = 90.00
b = 91.497β = 93.88
c = 90.897γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM025765
National Institutes of Health/National Institute of General Medical SciencesUnited StatesT32 GM008295
National Institutes of Health/National Institute of General Medical SciencesUnited StatesP50GM082250
National Science Foundation (United States)United StatesCHE-0840505

Revision History 

  • Version 1.0: 2015-09-30
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence, Derived calculations