4WED

Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of ABC transporter substrate-binding protein from Sinorhizobium meliloti

Shabalin, I.G.Handing, K.B.Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ABC transporter, periplasmic solute-binding protein
A
525Rhizobium meliloti (strain 1021)Mutation(s): 0 
Find proteins for Q92YH7 (Rhizobium meliloti (strain 1021))
Go to UniProtKB:  Q92YH7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
FMT
Query on FMT

Download SDF File 
Download CCD File 
A
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 57.327α = 90.00
b = 57.327β = 90.00
c = 132.063γ = 120.00
Software Package:
Software NamePurpose
HKL-3000data scaling
HKL-3000phasing
HKL-3000data reduction
PDB_EXTRACTdata extraction
MLPHAREphasing
SHELXphasing
DENZOdata reduction
REFMACrefinement
DMphasing
SCALEPACKdata scaling
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited States--

Revision History 

  • Version 1.0: 2014-09-24
    Type: Initial release
  • Version 1.1: 2015-08-26
    Type: Data collection
  • Version 1.2: 2017-11-22
    Type: Derived calculations, Refinement description