4WBE | pdb_00004wbe

Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group

PDB DOI: https://doi.org/10.2210/pdb4WBE/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-09-03 Released: 2015-10-21
Deposition Author(s): Wu, Y., Zhu, J., Huang, X., Du, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free:
0.231 (Depositor), 0.231 (DCC)
R-Value Work:
0.196 (Depositor), 0.196 (DCC)
R-Value Observed:
0.199 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group

Wu, Y., Zhu, J., Huang, X., Du, Z.

To be published.

Macromolecule Content

Total Structure Weight: 42.74 kDa
Atom Count: 3,258
Modeled Residue Count: 359
Deposited Residue Count: 360
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Caprin-1	A, B, C	120	Homo sapiens	Mutation(s): 0 Gene Names: CAPRIN1, GPIAP1, GPIP137, M11S1, RNG105
UniProt & NIH Common Fund Data Resources
Find proteins for Q14444 (Homo sapiens) Explore Q14444 Go to UniProtKB: Q14444
PHAROS: Q14444 GTEx: ENSG00000135387
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q14444
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.231 (Depositor), 0.231 (DCC)
R-Value Work: 0.196 (Depositor), 0.196 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.95	α = 90
b = 77.46	β = 90.3
c = 58.02	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-10-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-10-21
Type: Initial release
Version 1.1: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.