4W9O

The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-5-[(1R)-1,2-dihydroxyethyl]-3-[2-(3,4-dimethoxyphenoxy)ethyl]-3,10-diazabicyclo[4.3.1]decan-2-one


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.139 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Rational Design and Asymmetric Synthesis of Potent and Neurotrophic Ligands for FK506-Binding Proteins (FKBPs).

Pomplun, S.Wang, Y.Kirschner, A.Kozany, C.Bracher, A.Hausch, F.

(2015) Angew.Chem.Int.Ed.Engl. 54: 345-348

  • DOI: 10.1002/anie.201408776
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • To create highly efficient inhibitors for FK506-binding proteins, a new asymmetric synthesis for pro-(S)-C(5) -branched [4.3.1] aza-amide bicycles was developed. The key step of the synthesis is an HF-driven N-acyliminium cyclization. Functionalizati ...

    To create highly efficient inhibitors for FK506-binding proteins, a new asymmetric synthesis for pro-(S)-C(5) -branched [4.3.1] aza-amide bicycles was developed. The key step of the synthesis is an HF-driven N-acyliminium cyclization. Functionalization of the C(5)  moiety resulted in novel protein contacts with the psychiatric risk factor FKBP51, which led to a more than 280-fold enhancement in affinity. The most potent ligands facilitated the differentiation of N2a neuroblastoma cells with low nanomolar potency.


    Related Citations: 
    • Structural characterization of the PPIase domain of FKBP51, a cochaperone of human Hsp90
      Bracher, A.,Kozany, C.,Thost, A.-K.,Hausch, F.
      (2011) Acta Cryst. Sect. D 67: 549


    Organizational Affiliation

    Max Planck Institute of Psychiatry, Kraepelinstr. 2-10, 80804 Munich (Germany).




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptidyl-prolyl cis-trans isomerase FKBP5
A, E
128Homo sapiensMutation(s): 1 
Gene Names: FKBP5 (AIG6, FKBP51)
EC: 5.2.1.8
Find proteins for Q13451 (Homo sapiens)
Go to Gene View: FKBP5
Go to UniProtKB:  Q13451
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
E
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
3JQ
Query on 3JQ

Download SDF File 
Download CCD File 
A, E
(1S,5S,6R)-10-[(3,5-dichlorophenyl)sulfonyl]-5-[(1R)-1,2-dihydroxyethyl]-3-[2-(3,4-dimethoxyphenoxy)ethyl]-3,10-diazabicyclo[4.3.1]decan-2-one
C26 H32 Cl2 N2 O8 S
JKYLGBPUGDRSCP-BJESRGMDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.27 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.139 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 72.704α = 90.00
b = 50.586β = 115.54
c = 68.953γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XSCALEdata scaling
XSCALEdata reduction
XDSdata reduction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-03
    Type: Initial release
  • Version 1.1: 2015-01-14
    Type: Database references