How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation.

Zhou, J.; Lancaster, L.; Donohue, J.P.; Noller, H.F.

doi:10.2210/pdb4w29/pdb

Macromolecule Content

Total Structure Weight: 4630819.50
Atom Count: 312066
Residue Count: 23492
Unique protein chains: 54
Unique nucleic acid chains: 6

4W29

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

DOI: 10.2210/pdb4W29/pdb
Entry 4W29 supersedes 4QS0, 4QS1, 4QS2, 4QS3
NDB: NA3180

Classification: RIBOSOME/Antibiotic
Organism(s): Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039), Escherichia coli, Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), Thermus thermophilus HB27, Escherichia coli str. K-12 substr. MG1655, Thermus thermophilus

Deposited: 2014-07-02 Released: 2014-10-01
Deposition Author(s): Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.8 Å
R-Value Free: 0.331
R-Value Work: 0.295

wwPDB Validation3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation.

Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.

(2014) Science 345: 1188-1191

PubMed: 25190797 Search on PubMedSearch on PubMed Central
DOI: 10.1126/science.1255030
Primary Citation of Related Structures:
4QS3, 4QS2, 4QS1, 4QS0

PubMed Abstract:

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S2	AB, CB	235	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsB (rps2)
Find proteins for P62662 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62662
Protein Feature View Full Protein Feature View for P62662

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S3	AC, CC	207	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsC (rps3)
Find proteins for P62663 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62663
Protein Feature View Full Protein Feature View for P62663

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S4	AD, CD	208	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsD (rps4)
Find proteins for P62664 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62664
Protein Feature View Full Protein Feature View for P62664

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S5	AE, CE	151	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsE (rps5)
Find proteins for P62665 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62665
Protein Feature View Full Protein Feature View for P62665

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S6	AF, CF	101	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsF (rps6)
Find proteins for P62666 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62666
Protein Feature View Full Protein Feature View for P62666

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S7	AG, CG	155	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsG (rps7)
Find proteins for P62667 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62667
Protein Feature View Full Protein Feature View for P62667

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S8	AH, CH	138	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsH (rps8)
Find proteins for P62668 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62668
Protein Feature View Full Protein Feature View for P62668

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S9	AI, CI	127	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpsI (rps9)
Find proteins for P80374 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P80374
Protein Feature View Full Protein Feature View for P80374

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S10	AJ, CJ	99	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsJ (rps10)
Find proteins for P62653 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62653
Protein Feature View Full Protein Feature View for P62653

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S11	AK, CK	119	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsK (rps11)
Find proteins for P62654 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62654
Protein Feature View Full Protein Feature View for P62654

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S12	AL, CL	125	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsL (rps12)
Find proteins for P61941 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P61941
Protein Feature View Full Protein Feature View for P61941

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S13	AM, CM	125	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsM (rps13)
Find proteins for P62655 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62655
Protein Feature View Full Protein Feature View for P62655

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S14 type Z	AN, CN	60	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsZ (rps14, rpsN)
Find proteins for P62656 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62656
Protein Feature View Full Protein Feature View for P62656

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S15	AO, CO	88	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsO (rps15)
Find proteins for P62657 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62657
Protein Feature View Full Protein Feature View for P62657

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S16	AP, CP	84	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsP (rps16)
Find proteins for P62238 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62238
Protein Feature View Full Protein Feature View for P62238

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S17	AQ, CQ	100	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpsQ
Find proteins for P0DOY7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P0DOY7
Protein Feature View Full Protein Feature View for P0DOY7

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S18	AR, CR	70	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsR (rps18)
Find proteins for P62659 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62659
Protein Feature View Full Protein Feature View for P62659

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S19	AS, CS	79	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpsS (rps19)
Find proteins for P62660 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62660
Protein Feature View Full Protein Feature View for P62660

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details
30S ribosomal protein S20	AT, CT	99	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpsT (rps20)
Find proteins for P80380 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P80380
Protein Feature View Full Protein Feature View for P80380

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details
Elongation factor G	AY, CY	687	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: fusA
Find proteins for Q72I01 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I01
Protein Feature View Full Protein Feature View for Q72I01

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L1	BC, DC	228	Thermus thermophilus	Mutation(s): 0 Gene Names: rplA
Find proteins for A0A1J1EJ43 (Thermus thermophilus) Go to UniProtKB: A0A1J1EJ43
Protein Feature View Full Protein Feature View for A0A1J1EJ43

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L2	BD, DD	275	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplB
Find proteins for Q72I07 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I07
Protein Feature View Full Protein Feature View for Q72I07

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L3	BE, DE	205	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplC
Find proteins for Q72I04 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I04
Protein Feature View Full Protein Feature View for Q72I04

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L4	BF, DF	208	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rplD
Find proteins for Q5SHN9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: Q5SHN9
Protein Feature View Full Protein Feature View for Q5SHN9

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L5	BG, DG	181	Thermus thermophilus	Mutation(s): 0 Gene Names: rplE (rpl5)
Find proteins for P41201 (Thermus thermophilus) Go to UniProtKB: P41201
Protein Feature View Full Protein Feature View for P41201

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L6	BH, DH	167	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplF
Find proteins for Q72I19 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I19
Protein Feature View Full Protein Feature View for Q72I19

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein l10	BJ, DJ	170	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L11	BK, DK	140	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplK
Find proteins for P62442 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: P62442
Protein Feature View Full Protein Feature View for P62442

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L13	BN, DN	139	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplM
Find proteins for Q72IN1 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72IN1
Protein Feature View Full Protein Feature View for Q72IN1

Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L14	BO, DO	122	Thermus thermophilus	Mutation(s): 0 Gene Names: rplN
Find proteins for A0A1J1EU54 (Thermus thermophilus) Go to UniProtKB: A0A1J1EU54
Protein Feature View Full Protein Feature View for A0A1J1EU54

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L15	BP, DP	146	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplO
Find proteins for Q72I23 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I23
Protein Feature View Full Protein Feature View for Q72I23

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L16	BQ, DQ	141	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplP
Find proteins for Q72I11 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I11
Protein Feature View Full Protein Feature View for Q72I11

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L17	BR, DR	117	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplQ
Find proteins for Q72I33 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I33
Protein Feature View Full Protein Feature View for Q72I33

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L18	BS, DS	99	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplR
Find proteins for Q72I20 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I20
Protein Feature View Full Protein Feature View for Q72I20

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L19	BT, DT	138	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rplS
Find proteins for P60490 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P60490
Protein Feature View Full Protein Feature View for P60490

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L20	BU, DU	117	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplT
Find proteins for Q72L76 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72L76
Protein Feature View Full Protein Feature View for Q72L76

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L21	BV, DV	101	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplU
Find proteins for Q72HR2 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72HR2
Protein Feature View Full Protein Feature View for Q72HR2

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L22	BW, DW	113	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplV
Find proteins for Q72I09 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I09
Protein Feature View Full Protein Feature View for Q72I09

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L23	BX, DX	93	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplW
Find proteins for Q72I06 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I06
Protein Feature View Full Protein Feature View for Q72I06

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L24	BY, DY	107	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplX
Find proteins for Q72I15 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I15
Protein Feature View Full Protein Feature View for Q72I15

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L25	BZ, DZ	185	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplY (ctc)
Find proteins for Q72IA7 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72IA7
Protein Feature View Full Protein Feature View for Q72IA7

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L27	B0, D0	84	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpmA
Find proteins for P60493 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P60493
Protein Feature View Full Protein Feature View for P60493

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L28	B1, D1	93	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpmB
Find proteins for P60494 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P60494
Protein Feature View Full Protein Feature View for P60494

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L29	B2, D2	71	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpmC
Find proteins for Q72I12 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I12
Protein Feature View Full Protein Feature View for Q72I12

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L30	B3, D3	60	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpmD
Find proteins for Q72I22 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I22
Protein Feature View Full Protein Feature View for Q72I22

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L31	B4, D4	35	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpmE
Find proteins for Q72JR0 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72JR0
Protein Feature View Full Protein Feature View for Q72JR0

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L32	B5, D5	59	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpmF (rpl32)
Find proteins for P80339 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P80339
Protein Feature View Full Protein Feature View for P80339

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L33	B6, D6	50	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpmG
Find proteins for Q72GW3 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72GW3
Protein Feature View Full Protein Feature View for Q72GW3

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L34	B7, D7	49	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Mutation(s): 0 Gene Names: rpmH (rpl34)
Find proteins for P80340 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Go to UniProtKB: P80340
Protein Feature View Full Protein Feature View for P80340

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L35	B8, D8	64	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpmI
Find proteins for Q72L77 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72L77
Protein Feature View Full Protein Feature View for Q72L77

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L36	B9, D9	37	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rpmJ
Find proteins for Q72I28 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72I28
Protein Feature View Full Protein Feature View for Q72I28

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L7/L12	Be, De	103	Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)	Mutation(s): 0 Gene Names: rplL
Find proteins for Q72GS2 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)) Go to UniProtKB: Q72GS2
Protein Feature View Full Protein Feature View for Q72GS2

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L7/L12	Bf, Bg, Df, Dg	31	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details
50S ribosomal protein L7/L12	Bh, Dh	30	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Entity ID: 21
Molecule	Chains	Length	Organism
16S Ribosomal RNA	AA,CA	1511	Thermus thermophilus HB27

Entity ID: 22
Molecule	Chains	Length	Organism
tRNA	AW,CW	77	Escherichia coli

Entity ID: 23
Molecule	Chains	Length	Organism
mRNA	AV,CV	36	Escherichia coli str. K-12 substr. MG1655

Entity ID: 24
Molecule	Chains	Length	Organism
tRNA	AX,CX	78	Escherichia coli

Entity ID: 59
Molecule	Chains	Length	Organism
23S Ribosomal RNA	BA,DA	2879	Thermus thermophilus HB27

Entity ID: 60
Molecule	Chains	Length	Organism
5S Ribosomal RNA	BB,DB	119	Thermus thermophilus HB27

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
GDP Query on GDP Download SDF File Download CCD File	AY, CY	GUANOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₁ P₂ QGWNDRXFNXRZMB-UUOKFMHZSA-N		Ligand Interaction
FUA Query on FUA Download SDF File Download CCD File	AY, CY	FUSIDIC ACID C₃₁ H₄₈ O₆ IECPWNUMDGFDKC-MZJAQBGESA-N		Ligand Interaction
MG Query on MG Download SDF File Download CCD File	BA, CY	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction
NMY Query on NMY Download SDF File Download CCD File	AA, BA, CA, DA	NEOMYCIN MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN C₂₃ H₄₆ N₆ O₁₃ PGBHMTALBVVCIT-VCIWKGPPSA-N		Ligand Interaction

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
UNK Query on UNK	Be, Bf, Bg, Bh, BJ, De, Df, Dg, Dh, DJ	L-PEPTIDE LINKING	C₄ H₉ N O₂		--
ACE Query on ACE	AX, CX	NON-POLYMER	C₂ H₄ O		--

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.8 Å
R-Value Free: 0.331
R-Value Work: 0.295
Space Group: C 1 2 1

Unit Cell:

Length (Å)	Angle (°)
a = 306.919	α = 90.00
b = 677.002	β = 89.90
c = 356.780	γ = 90.00

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
XDS	data reduction
PHENIX	refinement

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2014-07-02
Released Date: 2014-10-01
Deposition Author(s): Zhou, J., Lancaster, L., Donohue, J.P., Noller, H.F.
This entry supersedes: 4QS0 4QS1 4QS2 4QS3

Revision History

Version 1.0: 2014-10-01
Type: Initial release
Version 1.1: 2014-12-10
Type: Other
Version 1.2: 2017-05-31
Type: Database references

Prepare Data

Validate Data

Deposit Data

Deposition Help & Resources

159670 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

4W29

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

How the ribosome hands the A-site tRNA to the P site during EF-G-catalyzed translocation.

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