4V9O

Control of ribosomal subunit rotation by elongation factor G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.223 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Control of ribosomal subunit rotation by elongation factor G.

Pulk, A.Cate, J.H.

(2013) Science 340: 1235970-1235970

  • DOI: https://doi.org/10.1126/science.1235970
  • Primary Citation of Related Structures:  
    4V9O, 4V9P

  • PubMed Abstract: 

    Protein synthesis by the ribosome requires the translocation of transfer RNAs and messenger RNA by one codon after each peptide bond is formed, a reaction that requires ribosomal subunit rotation and is catalyzed by the guanosine triphosphatase (GTPase) elongation factor G (EF-G). We determined 3 angstrom resolution x-ray crystal structures of EF-G complexed with a nonhydrolyzable guanosine 5'-triphosphate (GTP) analog and bound to the Escherichia coli ribosome in different states of ribosomal subunit rotation. The structures reveal that EF-G binding to the ribosome stabilizes switch regions in the GTPase active site, resulting in a compact EF-G conformation that favors an intermediate state of ribosomal subunit rotation. These structures suggest that EF-G controls the translocation reaction by cycles of conformational rigidity and relaxation before and after GTP hydrolysis.


  • Organizational Affiliation

    Department of Molecular and Cell Biology, California Institute for Quantitative Biosciences, University of California, Berkeley, CA 94720, USA.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2B [auth AC],
GB [auth CC],
JD [auth EC],
MF [auth GC]
273Escherichia coli K-12Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3D [auth AD],
HB [auth CD],
KD [auth ED],
NF [auth GD]
209Escherichia coli K-12Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4E [auth AE],
IB [auth CE],
LD [auth EE],
OF [auth GE]
201Escherichia coli K-12Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5F [auth AF],
JB [auth CF],
MD [auth EF],
PF [auth GF]
179Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P62399 (Escherichia coli (strain K12))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6G [auth AG],
KB [auth CG],
ND [auth EG],
QF [auth GG]
177Escherichia coli K-12Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9H [auth AH],
LB [auth CH],
OD [auth EH],
RF [auth GH]
50Escherichia coli K-12Mutation(s): 0 
Gene Names: rpll
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L11I [auth AI],
MB [auth CI],
PD [auth EI],
SF [auth GI]
142Escherichia coli K-12Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13J [auth AJ],
NB [auth CJ],
QD [auth EJ],
TF [auth GJ]
142Escherichia coli K-12Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14K [auth AK],
OB [auth CK],
RD [auth EK],
UF [auth GK]
123Escherichia coli K-12Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15L [auth AL],
PB [auth CL],
SD [auth EL],
VF [auth GL]
144Escherichia coli K-12Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16M [auth AM],
QB [auth CM],
TD [auth EM],
WF [auth GM]
136Escherichia coli K-12Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17N [auth AN],
RB [auth CN],
UD [auth EN],
XF [auth GN]
127Escherichia coli K-12Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18O [auth AO],
SB [auth CO],
VD [auth EO],
YF [auth GO]
117Escherichia coli K-12Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19P [auth AP],
TB [auth CP],
WD [auth EP],
ZF [auth GP]
115Escherichia coli K-12Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20AG [auth GQ],
Q [auth AQ],
UB [auth CQ],
XD [auth EQ]
118Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21BG [auth GR],
R [auth AR],
VB [auth CR],
YD [auth ER]
103Escherichia coli K-12Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22CG [auth GS],
S [auth AS],
WB [auth CS],
ZD [auth ES]
110Escherichia coli K-12Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23AE [auth ET],
DG [auth GT],
T [auth AT],
XB [auth CT]
100Escherichia coli K-12Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24BE [auth EU],
EG [auth GU],
U [auth AU],
YB [auth CU]
104Escherichia coli K-12Mutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25CE [auth EV],
FG [auth GV],
V [auth AV],
ZB [auth CV]
94Escherichia coli K-12Mutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27AC [auth CW],
DE [auth EW],
GG [auth GW],
W [auth AW]
85Escherichia coli K-12Mutation(s): 0 
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Find proteins for P0A7L8 (Escherichia coli (strain K12))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28BC [auth CX],
EE [auth EX],
HG [auth GX],
X [auth AX]
78Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P0A7M2 (Escherichia coli (strain K12))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29CC [auth CY],
FE [auth EY],
IG [auth GY],
Y [auth AY]
63Escherichia coli K-12Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30DC [auth CZ],
GE [auth EZ],
JG [auth GZ],
Z [auth AZ]
59Escherichia coli K-12Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32AA [auth A0],
EC [auth C0],
HE [auth E0],
KG [auth G0]
57Escherichia coli K-12Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33BA [auth A1],
FC [auth C1],
IE [auth E1],
LG [auth G1]
55Escherichia coli K-12Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34CA [auth A2],
GC [auth C2],
JE [auth E2],
MG [auth G2]
46Escherichia coli K-12Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35DA [auth A3],
HC [auth C3],
KE [auth E3],
NG [auth G3]
65Escherichia coli K-12Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36EA [auth A4],
IC [auth C4],
LE [auth E4],
OG [auth G4]
38Escherichia coli K-12Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10FA [auth A5],
JC [auth C5],
ME [auth E5]
165Escherichia coli K-12Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L7/L12GA [auth A6]121Escherichia coli K-12Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2HA [auth BB],
LC [auth DB],
OE [auth FB],
QG [auth HB]
241Escherichia coli K-12Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3JA [auth BC],
MC [auth DC],
PE [auth FC],
RG [auth HC]
233Escherichia coli K-12Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4KA [auth BD],
NC [auth DD],
QE [auth FD],
SG [auth HD]
206Escherichia coli K-12Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5LA [auth BE],
OC [auth DE],
RE [auth FE],
TG [auth HE]
167Escherichia coli K-12Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6MA [auth BF],
PC [auth DF],
SE [auth FF],
UG [auth HF]
135Escherichia coli K-12Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7NA [auth BG],
QC [auth DG],
TE [auth FG],
VG [auth HG]
179Escherichia coli K-12Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8OA [auth BH],
RC [auth DH],
UE [auth FH],
WG [auth HH]
130Escherichia coli K-12Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9PA [auth BI],
SC [auth DI],
VE [auth FI],
XG [auth HI]
130Escherichia coli K-12Mutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10QA [auth BJ],
TC [auth DJ],
WE [auth FJ],
YG [auth HJ]
103Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11RA [auth BK],
UC [auth DK],
XE [auth FK],
ZG [auth HK]
129Escherichia coli K-12Mutation(s): 0 
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12AH [auth HL],
SA [auth BL],
VC [auth DL],
YE [auth FL]
124Escherichia coli K-12Mutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13BH [auth HM],
TA [auth BM],
WC [auth DM],
ZE [auth FM]
118Escherichia coli K-12Mutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14AF [auth FN],
CH [auth HN],
UA [auth BN],
XC [auth DN]
101Escherichia coli K-12Mutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15BF [auth FO],
DH [auth HO],
VA [auth BO],
YC [auth DO]
89Escherichia coli K-12Mutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16CF [auth FP],
EH [auth HP],
WA [auth BP],
ZC [auth DP]
82Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17AD [auth DQ],
DF [auth FQ],
FH [auth HQ],
XA [auth BQ]
84Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18BD [auth DR],
EF [auth FR],
GH [auth HR],
YA [auth BR]
75Escherichia coli K-12Mutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19CD [auth DS],
FF [auth FS],
HH [auth HS],
ZA [auth BS]
92Escherichia coli K-12Mutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20AB [auth BT],
DD [auth DT],
GF [auth FT],
IH [auth HT]
87Escherichia coli K-12Mutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S21BB [auth BU],
ED [auth DU],
HF [auth FU],
JH [auth HU]
71Escherichia coli K-12Mutation(s): 0 
UniProt
Find proteins for P68679 (Escherichia coli (strain K12))
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
Elongation factor GCB [auth BV],
FD [auth DV],
IF [auth FV],
KH [auth HV]
704Escherichia coli K-12Mutation(s): 0 
Gene Names: fusA
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Find proteins for P0A6M8 (Escherichia coli (strain K12))
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
ViomycinDB [auth BW],
GD [auth DW],
JF [auth FW],
LH [auth HW]
6StreptomycesMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
5S rRNAA [auth AB],
EB [auth CB],
ID [auth EB],
KF [auth GB]
120Escherichia coli K-12
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Entity ID: 3
MoleculeChains LengthOrganismImage
23S rRNAC [auth AA],
FB [auth CA],
HD [auth EA],
LF [auth GA]
2,904Escherichia coli K-12
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Entity ID: 35
MoleculeChains LengthOrganismImage
16S rRNAIA [auth BA],
KC [auth DA],
NE [auth FA],
PG [auth HA]
1,542Escherichia coli K-12
Sequence Annotations
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GCP
Query on GCP

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FDA [auth FV],
MKA [auth HV],
RO [auth BV],
YV [auth DV]
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
C11 H18 N5 O13 P3
PHBDHXOBFUBCJD-KQYNXXCUSA-N
ZN
Query on ZN

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GU [auth C4],
NBA [auth E4],
UIA [auth G4],
ZM [auth A4]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AAA [auth EA]
ABA [auth EA]
ACA [auth FA]
ADA [auth FA]
AEA [auth GA]
AAA [auth EA],
ABA [auth EA],
ACA [auth FA],
ADA [auth FA],
AEA [auth GA],
AFA [auth GA],
AGA [auth GA],
AHA [auth GA],
AI [auth AA],
AIA [auth GA],
AJ [auth AA],
AJA [auth HA],
AK [auth AA],
AKA [auth HA],
AL [auth AA],
AM [auth AA],
AN [auth BA],
AO [auth BA],
AP [auth CA],
AQ [auth CA],
AR [auth CA],
AS [auth CA],
AT [auth CA],
AU [auth CA],
AV [auth DA],
AW [auth EA],
AX [auth EA],
AY [auth EA],
AZ [auth EA],
BAA [auth EA],
BBA [auth EA],
BCA [auth FA],
BDA [auth FE],
BEA [auth GA],
BFA [auth GA],
BGA [auth GA],
BHA [auth GA],
BI [auth AA],
BIA [auth GA],
BJ [auth AA],
BJA [auth HA],
BK [auth AA],
BKA [auth HA],
BL [auth AA],
BM [auth AA],
BN [auth BA],
BO [auth BA],
BP [auth CA],
BQ [auth CA],
BR [auth CA],
BS [auth CA],
BT [auth CA],
BU [auth CA],
BV [auth DA],
BW [auth EA],
BX [auth EA],
BY [auth EA],
BZ [auth EA],
CAA [auth EA],
CBA [auth EA],
CCA [auth FA],
CDA [auth FN],
CEA [auth GA],
CFA [auth GA],
CGA [auth GA],
CHA [auth GA],
CI [auth AA],
CIA [auth GA],
CJ [auth AA],
CJA [auth HA],
CK [auth AA],
CKA [auth HA],
CL [auth AA],
CM [auth AA],
CN [auth BA],
CO [auth BA],
CP [auth CA],
CQ [auth CA],
CR [auth CA],
CS [auth CA],
CT [auth CA],
CU [auth CA],
CV [auth DA],
CW [auth EA],
CX [auth EA],
CY [auth EA],
CZ [auth EA],
DAA [auth EA],
DBA [auth EA],
DCA [auth FA],
DDA [auth FN],
DEA [auth GA],
DFA [auth GA],
DGA [auth GA],
DHA [auth GA],
DI [auth AA],
DIA [auth GA],
DJ [auth AA],
DJA [auth HA],
DK [auth AA],
DKA [auth HA],
DL [auth AA],
DM [auth AA],
DN [auth BA],
DO [auth BA],
DP [auth CA],
DQ [auth CA],
DR [auth CA],
DS [auth CA],
DT [auth CA],
DU [auth CE],
DV [auth DA],
DW [auth EA],
DX [auth EA],
DY [auth EA],
DZ [auth EA],
EAA [auth EA],
EBA [auth EA],
ECA [auth FA],
EDA [auth FU],
EEA [auth GA],
EFA [auth GA],
EGA [auth GA],
EHA [auth GA],
EI [auth AA],
EIA [auth GA],
EJ [auth AA],
EJA [auth HA],
EK [auth AA],
EKA [auth HA],
EL [auth AA],
EM [auth AA],
EN [auth BA],
EO [auth BA],
EP [auth CA],
EQ [auth CA],
ER [auth CA],
ES [auth CA],
ET [auth CA],
EU [auth CN],
EV [auth DA],
EW [auth EA],
EX [auth EA],
EY [auth EA],
EZ [auth EA],
FAA [auth EA],
FBA [auth EA],
FCA [auth FA],
FEA [auth GA],
FFA [auth GA],
FGA [auth GA],
FHA [auth GA],
FI [auth AA],
FIA [auth GA],
FJ [auth AA],
FJA [auth HA],
FK [auth AA],
FKA [auth HA],
FL [auth AA],
FM [auth AA],
FN [auth BA],
FO [auth BA],
FP [auth CA],
FQ [auth CA],
FR [auth CA],
FS [auth CA],
FT [auth CA],
FU [auth C4],
FV [auth DA],
FW [auth EA],
FX [auth EA],
FY [auth EA],
FZ [auth EA],
GAA [auth EA],
GBA [auth EA],
GCA [auth FA],
GDA [auth FV],
GEA [auth GA],
GFA [auth GA],
GGA [auth GA],
GHA [auth GA],
GI [auth AA],
GIA [auth GA],
GJ [auth AA],
GJA [auth HA],
GK [auth AA],
GKA [auth HA],
GL [auth AA],
GM [auth AA],
GN [auth BA],
GO [auth BA],
GP [auth CA],
GQ [auth CA],
GR [auth CA],
GS [auth CA],
GT [auth CA],
GV [auth DA],
GW [auth EA],
GX [auth EA],
GY [auth EA],
GZ [auth EA],
HAA [auth EA],
HBA [auth EB],
HCA [auth FA],
HDA [auth GB],
HEA [auth GA],
HFA [auth GA],
HGA [auth GA],
HHA [auth GA],
HI [auth AA],
HIA [auth GA],
HJ [auth AA],
HJA [auth HA],
HK [auth AA],
HKA [auth HA],
HL [auth AA],
HM [auth AA],
HN [auth BA],
HO [auth BA],
HP [auth CA],
HQ [auth CA],
HR [auth CA],
HS [auth CA],
HT [auth CA],
HU [auth DA],
HV [auth DA],
HW [auth EA],
HX [auth EA],
HY [auth EA],
HZ [auth EA],
IAA [auth EA],
IBA [auth EB],
ICA [auth FA],
IDA [auth GB],
IEA [auth GA],
IFA [auth GA],
IGA [auth GA],
IHA [auth GA],
II [auth AA],
IIA [auth GA],
IJ [auth AA],
IJA [auth HA],
IK [auth AA],
IKA [auth HA],
IL [auth AA],
IM [auth AA],
IN [auth BA],
IO [auth BA],
IP [auth CA],
IQ [auth CA],
IR [auth CA],
IS [auth CA],
IT [auth CA],
IU [auth DA],
IV [auth DA],
IW [auth EA],
IX [auth EA],
IY [auth EA],
IZ [auth EA],
JAA [auth EA],
JBA [auth EB],
JCA [auth FA],
JDA [auth GB],
JEA [auth GA],
JFA [auth GA],
JGA [auth GA],
JHA [auth GA],
JI [auth AA],
JIA [auth GA],
JJ [auth AA],
JJA [auth HA],
JK [auth AA],
JKA [auth HA],
JL [auth AA],
JM [auth AA],
JN [auth BA],
JO [auth BA],
JP [auth CA],
JQ [auth CA],
JR [auth CA],
JS [auth CA],
JT [auth CA],
JU [auth DA],
JV [auth DA],
JW [auth EA],
JX [auth EA],
JY [auth EA],
JZ [auth EA],
KAA [auth EA],
KBA [auth EB],
KCA [auth FA],
KDA [auth GB],
KEA [auth GA],
KFA [auth GA],
KGA [auth GA],
KHA [auth GA],
KI [auth AA],
KIA [auth GA],
KJ [auth AA],
KJA [auth HA],
KK [auth AA],
KKA [auth HE],
KL [auth AA],
KM [auth AA],
KN [auth BA],
KO [auth BA],
KP [auth CA],
KQ [auth CA],
KR [auth CA],
KS [auth CA],
KT [auth CA],
KU [auth DA],
KV [auth DA],
KW [auth EA],
KX [auth EA],
KY [auth EA],
KZ [auth EA],
LAA [auth EA],
LBA [auth ED],
LCA [auth FA],
LDA [auth GA],
LEA [auth GA],
LFA [auth GA],
LGA [auth GA],
LHA [auth GA],
LI [auth AA],
LIA [auth GA],
LJ [auth AA],
LJA [auth HA],
LK [auth AA],
LKA [auth HK],
LL [auth AA],
LM [auth AA],
LN [auth BA],
LO [auth BA],
LP [auth CA],
LQ [auth CA],
LR [auth CA],
LS [auth CA],
LT [auth CA],
LU [auth DA],
LV [auth DA],
LW [auth EA],
LX [auth EA],
LY [auth EA],
LZ [auth EA],
MAA [auth EA],
MBA [auth EE],
MCA [auth FA],
MDA [auth GA],
MEA [auth GA],
MFA [auth GA],
MGA [auth GA],
MH [auth AB],
MHA [auth GA],
MI [auth AA],
MIA [auth GA],
MJ [auth AA],
MJA [auth HA],
MK [auth AA],
ML [auth AA],
MM [auth AA],
MN [auth BA],
MO [auth BA],
MP [auth CA],
MQ [auth CA],
MR [auth CA],
MS [auth CA],
MT [auth CA],
MU [auth DA],
MV [auth DA],
MW [auth EA],
MX [auth EA],
MY [auth EA],
MZ [auth EA],
NAA [auth EA],
NCA [auth FA],
NDA [auth GA],
NEA [auth GA],
NFA [auth GA],
NGA [auth GA],
NH [auth AB],
NHA [auth GA],
NI [auth AA],
NIA [auth GA],
NJ [auth AA],
NJA [auth HA],
NK [auth AA],
NKA [auth HV],
NL [auth AA],
NM [auth AA],
NN [auth BA],
NO [auth BA],
NP [auth CA],
NQ [auth CA],
NR [auth CA],
NS [auth CA],
NT [auth CA],
NU [auth DA],
NV [auth DA],
NW [auth EA],
NX [auth EA],
NY [auth EA],
NZ [auth EA],
OAA [auth EA],
OBA [auth FA],
OCA [auth FA],
ODA [auth GA],
OEA [auth GA],
OFA [auth GA],
OGA [auth GA],
OH [auth AB],
OHA [auth GA],
OI [auth AA],
OIA [auth GA],
OJ [auth AA],
OJA [auth HA],
OK [auth AA],
OL [auth AA],
OM [auth AA],
ON [auth BA],
OO [auth BE],
OP [auth CA],
OQ [auth CA],
OR [auth CA],
OS [auth CA],
OT [auth CA],
OU [auth DA],
OV [auth DA],
OW [auth EA],
OX [auth EA],
OY [auth EA],
OZ [auth EA],
PAA [auth EA],
PBA [auth FA],
PCA [auth FA],
PDA [auth GA],
PEA [auth GA],
PFA [auth GA],
PGA [auth GA],
PH [auth AB],
PHA [auth GA],
PI [auth AA],
PIA [auth GA],
PJ [auth AA],
PJA [auth HA],
PK [auth AA],
PL [auth AA],
PM [auth AA],
PN [auth BA],
PO [auth BN],
PP [auth CA],
PQ [auth CA],
PR [auth CA],
PS [auth CA],
PT [auth CA],
PU [auth DA],
PV [auth DA],
PW [auth EA],
PX [auth EA],
PY [auth EA],
PZ [auth EA],
QAA [auth EA],
QBA [auth FA],
QCA [auth FA],
QDA [auth GA],
QEA [auth GA],
QFA [auth GA],
QGA [auth GA],
QH [auth AC],
QHA [auth GA],
QI [auth AA],
QIA [auth GA],
QJ [auth AA],
QJA [auth HA],
QK [auth AA],
QL [auth AA],
QM [auth AA],
QN [auth BA],
QO [auth BU],
QP [auth CA],
QQ [auth CA],
QR [auth CA],
QS [auth CA],
QT [auth CA],
QU [auth DA],
QV [auth DA],
QW [auth EA],
QX [auth EA],
QY [auth EA],
QZ [auth EA],
RAA [auth EA],
RBA [auth FA],
RCA [auth FA],
RDA [auth GA],
REA [auth GA],
RFA [auth GA],
RGA [auth GA],
RH [auth AA],
RHA [auth GA],
RI [auth AA],
RIA [auth GC],
RJ [auth AA],
RJA [auth HA],
RK [auth AA],
RL [auth AA],
RM [auth AA],
RN [auth BA],
RP [auth CA],
RQ [auth CA],
RR [auth CA],
RS [auth CA],
RT [auth CA],
RU [auth DA],
RV [auth DA],
RW [auth EA],
RX [auth EA],
RY [auth EA],
RZ [auth EA],
SAA [auth EA],
SBA [auth FA],
SCA [auth FA],
SDA [auth GA],
SEA [auth GA],
SFA [auth GA],
SGA [auth GA],
SH [auth AA],
SHA [auth GA],
SI [auth AA],
SIA [auth GC],
SJ [auth AA],
SJA [auth HA],
SK [auth AA],
SL [auth AA],
SM [auth AA],
SN [auth BA],
SO [auth BV],
SP [auth CA],
SQ [auth CA],
SR [auth CA],
SS [auth CA],
ST [auth CA],
SU [auth DA],
SV [auth DA],
SW [auth EA],
SX [auth EA],
SY [auth EA],
SZ [auth EA],
TAA [auth EA],
TBA [auth FA],
TCA [auth FA],
TDA [auth GA],
TEA [auth GA],
TFA [auth GA],
TGA [auth GA],
TH [auth AA],
THA [auth GA],
TI [auth AA],
TIA [auth GL],
TJ [auth AA],
TJA [auth HA],
TK [auth AA],
TL [auth AA],
TM [auth AA],
TN [auth BA],
TO [auth CB],
TP [auth CA],
TQ [auth CA],
TR [auth CA],
TS [auth CA],
TT [auth CA],
TU [auth DA],
TV [auth DA],
TW [auth EA],
TX [auth EA],
TY [auth EA],
TZ [auth EA],
UAA [auth EA],
UBA [auth FA],
UCA [auth FA],
UDA [auth GA],
UEA [auth GA],
UFA [auth GA],
UGA [auth GA],
UH [auth AA],
UHA [auth GA],
UI [auth AA],
UJ [auth AA],
UJA [auth HA],
UK [auth AA],
UL [auth AA],
UM [auth AA],
UN [auth BA],
UO [auth CB],
UP [auth CA],
UQ [auth CA],
UR [auth CA],
US [auth CA],
UT [auth CA],
UU [auth DA],
UV [auth DA],
UW [auth EA],
UX [auth EA],
UY [auth EA],
UZ [auth EA],
VAA [auth EA],
VBA [auth FA],
VCA [auth FA],
VDA [auth GA],
VEA [auth GA],
VFA [auth GA],
VGA [auth GA],
VH [auth AA],
VHA [auth GA],
VI [auth AA],
VIA [auth HA],
VJ [auth AA],
VJA [auth HA],
VK [auth AA],
VL [auth AA],
VM [auth AA],
VN [auth BA],
VO [auth CB],
VP [auth CA],
VQ [auth CA],
VR [auth CA],
VS [auth CA],
VT [auth CA],
VU [auth DA],
VV [auth DA],
VW [auth EA],
VX [auth EA],
VY [auth EA],
VZ [auth EA],
WAA [auth EA],
WBA [auth FA],
WCA [auth FA],
WDA [auth GA],
WEA [auth GA],
WFA [auth GA],
WGA [auth GA],
WH [auth AA],
WHA [auth GA],
WI [auth AA],
WIA [auth HA],
WJ [auth AA],
WJA [auth HA],
WK [auth AA],
WL [auth AA],
WM [auth AA],
WN [auth BA],
WO [auth CB],
WP [auth CA],
WQ [auth CA],
WR [auth CA],
WS [auth CA],
WT [auth CA],
WU [auth DA],
WV [auth DA],
WW [auth EA],
WX [auth EA],
WY [auth EA],
WZ [auth EA],
XAA [auth EA],
XBA [auth FA],
XCA [auth FA],
XDA [auth GA],
XEA [auth GA],
XFA [auth GA],
XGA [auth GA],
XH [auth AA],
XHA [auth GA],
XI [auth AA],
XIA [auth HA],
XJ [auth AA],
XJA [auth HA],
XK [auth AA],
XL [auth AA],
XM [auth AE],
XN [auth BA],
XO [auth CA],
XP [auth CA],
XQ [auth CA],
XR [auth CA],
XS [auth CA],
XT [auth CA],
XU [auth DA],
XV [auth DA],
XW [auth EA],
XX [auth EA],
XY [auth EA],
XZ [auth EA],
YAA [auth EA],
YBA [auth FA],
YCA [auth FA],
YDA [auth GA],
YEA [auth GA],
YFA [auth GA],
YGA [auth GA],
YH [auth AA],
YHA [auth GA],
YI [auth AA],
YIA [auth HA],
YJ [auth AA],
YJA [auth HA],
YK [auth AA],
YL [auth AA],
YM [auth A4],
YN [auth BA],
YO [auth CA],
YP [auth CA],
YQ [auth CA],
YR [auth CA],
YS [auth CA],
YT [auth CA],
YU [auth DA],
YW [auth EA],
YX [auth EA],
YY [auth EA],
YZ [auth EA],
ZAA [auth EA],
ZBA [auth FA],
ZCA [auth FA],
ZDA [auth GA],
ZEA [auth GA],
ZFA [auth GA],
ZGA [auth GA],
ZH [auth AA],
ZHA [auth GA],
ZI [auth AA],
ZIA [auth HA],
ZJ [auth AA],
ZJA [auth HA],
ZK [auth AA],
ZL [auth AA],
ZN [auth BA],
ZO [auth CA],
ZP [auth CA],
ZQ [auth CA],
ZR [auth CA],
ZS [auth CA],
ZT [auth CA],
ZU [auth DA],
ZV [auth DV],
ZW [auth EA],
ZX [auth EA],
ZY [auth EA],
ZZ [auth EA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  3 Unique
IDChains TypeFormula2D DiagramParent
5OH
Query on 5OH
DB [auth BW],
GD [auth DW],
JF [auth FW],
LH [auth HW]
L-PEPTIDE LINKINGC6 H12 N4 O3ALA
DPP
Query on DPP
DB [auth BW],
GD [auth DW],
JF [auth FW],
LH [auth HW]
L-PEPTIDE LINKINGC3 H8 N2 O2ALA
KBE
Query on KBE
DB [auth BW],
GD [auth DW],
JF [auth FW],
LH [auth HW]
L-PEPTIDE LINKINGC6 H14 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.223 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 361.6α = 90
b = 361.77β = 103.566
c = 433.2γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
PHENIXmodel building
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Changes: Other
  • Version 1.2: 2014-12-17
    Changes: Structure summary