4V6V

Tetracycline resistance protein Tet(O) bound to the ribosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.1 of the entry. See complete history


Literature

Mechanism of tetracycline resistance by ribosomal protection protein Tet(O).

Li, W.Atkinson, G.C.Thakor, N.S.Allas, U.Lu, C.C.Chan, K.Y.Tenson, T.Schulten, K.Wilson, K.S.Hauryliuk, V.Frank, J.

(2013) Nat Commun 4: 1477-1477

  • DOI: 10.1038/ncomms2470
  • Primary Citation of Related Structures:  
    4V6V

  • PubMed Abstract: 
  • Tetracycline resistance protein Tet(O), which protects the bacterial ribosome from binding the antibiotic tetracycline, is a translational GTPase with significant similarity in both sequence and structure to the elongation factor EF-G. Here, we prese ...

    Tetracycline resistance protein Tet(O), which protects the bacterial ribosome from binding the antibiotic tetracycline, is a translational GTPase with significant similarity in both sequence and structure to the elongation factor EF-G. Here, we present an atomic model of the Tet(O)-bound 70S ribosome based on our cryo-electron microscopic reconstruction at 9.6-Å resolution. This atomic model allowed us to identify the Tet(O)-ribosome binding sites, which involve three characteristic loops in domain 4 of Tet(O). Replacements of the three amino-acid tips of these loops by a single glycine residue result in loss of Tet(O)-mediated tetracycline resistance. On the basis of these findings, the mechanism of Tet(O)-mediated tetracycline resistance can be explained in molecular detail.


    Organizational Affiliation

    Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York 10032, USA.



Macromolecules

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Entity ID: 1
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30S ribosomal protein S10AJ103Escherichia coliMutation(s): 0 
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30S ribosomal protein S11AK128Escherichia coliMutation(s): 0 
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30S ribosomal protein S12AL123Escherichia coliMutation(s): 0 
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30S ribosomal protein S13AM117Escherichia coliMutation(s): 0 
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30S ribosomal protein S14AN100Escherichia coliMutation(s): 0 
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30S ribosomal protein S15AO88Escherichia coliMutation(s): 0 
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30S ribosomal protein S16AP82Escherichia coliMutation(s): 0 
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30S ribosomal protein S17AQ83Escherichia coliMutation(s): 0 
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30S ribosomal protein S18AR74Escherichia coliMutation(s): 0 
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30S ribosomal protein S19AS91Escherichia coliMutation(s): 0 
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30S ribosomal protein S2AB240Escherichia coliMutation(s): 0 
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30S ribosomal protein S20AT86Escherichia coliMutation(s): 0 
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30S ribosomal protein S21AU70Escherichia coliMutation(s): 0 
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30S ribosomal protein S3AC232Escherichia coliMutation(s): 0 
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30S ribosomal protein S4AD205Escherichia coliMutation(s): 0 
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Entity ID: 16
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30S ribosomal protein S5AE166Escherichia coliMutation(s): 0 
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30S ribosomal protein S6AF135Escherichia coliMutation(s): 0 
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30S ribosomal protein S7AG178Escherichia coliMutation(s): 0 
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30S ribosomal protein S8AH129Escherichia coliMutation(s): 0 
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30S ribosomal protein S9AI129Escherichia coliMutation(s): 0 
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Entity ID: 21
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Tetracycline resistance protein TetOA1639Campylobacter jejuniMutation(s): 0 
Gene Names: tetOtet(O)
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50S ribosomal protein L1BC234Escherichia coliMutation(s): 0 
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50S ribosomal protein L10BJ164Escherichia coliMutation(s): 0 
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50S ribosomal protein L11BK141Escherichia coliMutation(s): 0 
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50S ribosomal protein L13BN142Escherichia coliMutation(s): 0 
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50S ribosomal protein L14BO123Escherichia coliMutation(s): 0 
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50S ribosomal protein L15BP144Escherichia coliMutation(s): 0 
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50S ribosomal protein L16BQ136Escherichia coliMutation(s): 0 
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50S ribosomal protein L17BR127Escherichia coliMutation(s): 0 
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50S ribosomal protein L18BS117Escherichia coliMutation(s): 0 
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50S ribosomal protein L19BT114Escherichia coliMutation(s): 0 
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50S ribosomal protein L2BD272Escherichia coliMutation(s): 0 
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50S ribosomal protein L20BU117Escherichia coliMutation(s): 0 
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50S ribosomal protein L21BV103Escherichia coliMutation(s): 0 
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50S ribosomal protein L22BW110Escherichia coliMutation(s): 0 
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50S ribosomal protein L23BX100Escherichia coliMutation(s): 0 
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50S ribosomal protein L24BY103Escherichia coliMutation(s): 0 
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50S ribosomal protein L25BZ94Escherichia coliMutation(s): 0 
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50S ribosomal protein L27B084Escherichia coliMutation(s): 0 
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50S ribosomal protein L28B177Escherichia coliMutation(s): 0 
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50S ribosomal protein L29B263Escherichia coliMutation(s): 0 
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50S ribosomal protein L3BE209Escherichia coliMutation(s): 0 
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50S ribosomal protein L30B358Escherichia coliMutation(s): 0 
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50S ribosomal protein L31B470Escherichia coliMutation(s): 0 
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50S ribosomal protein L32B556Escherichia coliMutation(s): 0 
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Entity ID: 49
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50S ribosomal protein L33B654Escherichia coliMutation(s): 0 
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Entity ID: 50
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50S ribosomal protein L34B746Escherichia coliMutation(s): 0 
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Entity ID: 51
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50S ribosomal protein L35B864Escherichia coliMutation(s): 0 
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50S ribosomal protein L36B938Escherichia coliMutation(s): 0 
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50S ribosomal protein L4BF201Escherichia coliMutation(s): 0 
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50S ribosomal protein L5BG178Escherichia coliMutation(s): 0 
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50S ribosomal protein L6BH176Escherichia coliMutation(s): 0 
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50S ribosomal protein L9BL149Escherichia coliMutation(s): 0 
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16S ribosomal RNAAA1542Escherichia coli
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mRNAA247Escherichia coli
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P-tRNAA377Escherichia coli
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23S ribosomal RNABA2904Escherichia coli
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5S ribosomal RNABa120Escherichia coli
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Changes: Other
  • Version 1.2: 2015-04-01
    Changes: Other
  • Version 2.0: 2018-07-18
    Changes: Data collection, Polymer sequence
  • Version 2.1: 2019-12-18
    Changes: Database references, Derived calculations, Other