4V6H | pdb_00004v6h

Crystal structure of succinate-semialdehyde dehydrogenase from Burkholderia pseudomallei

PDB DOI: https://doi.org/10.2210/pdb4V6H/pdb
Entry: 4V6H supersedes: 3IFH, 3IFG

Classification: OXIDOREDUCTASE
Organism(s): Burkholderia pseudomallei 1710b
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-07-24 Released: 2014-07-09
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free:
0.282 (Depositor), 0.280 (DCC)
R-Value Work:
0.236 (Depositor), 0.230 (DCC)
R-Value Observed:
0.238 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of succinate-semialdehyde dehydrogenase from Burkholderia pseudomallei

Edwards, T.E., Staker, B.L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecule Content

Total Structure Weight: 1,641.11 kDa
Atom Count: 114,732
Modeled Residue Count: 15,424
Deposited Residue Count: 15,488
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Succinate-semialdehyde dehydrogenase (NADP+)	A AA [auth 1] B BA [auth 2] C A, AA [auth 1], B, BA [auth 2], C, CA [auth 3], D, DA [auth 4], E, EA [auth 5], F, FA [auth 6], G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z	484	Burkholderia pseudomallei 1710b	Mutation(s): 0 Gene Names: gabD, BURPS1710b_2207 EC: 1.2.1.16
UniProt
Find proteins for Q3JS51 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JS51 Go to UniProtKB: Q3JS51
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q3JS51
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.70 Å
R-Value Free: 0.282 (Depositor), 0.280 (DCC)
R-Value Work: 0.236 (Depositor), 0.230 (DCC)
R-Value Observed: 0.238 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 185.656	α = 90
b = 164.873	β = 92.01
c = 278.901	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-07-09

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

This entry supersedes: 3IFH, 3IFG

Revision History (Full details and data files)

Version 1.0: 2014-07-09
Type: Initial release
Version 1.1: 2014-12-10
Changes: Other
Version 1.2: 2017-11-22
Changes: Refinement description
Version 1.3: 2023-09-20
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.