4V2A

human Unc5A ectodomain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.344 
  • R-Value Work: 0.327 
  • R-Value Observed: 0.328 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Flrt Structure: Balancing Repulsion and Cell Adhesion in Cortical and Vascular Development

Seiradake, E.Del Toro, D.Nagel, D.Cop, F.Haertl, R.Ruff, T.Seyit-Bremer, G.Harlos, K.Border, E.C.Acker-Palmer, A.Jones, E.Y.Klein, R.

(2014) Neuron 84: 370

  • DOI: 10.1016/j.neuron.2014.10.008
  • Primary Citation of Related Structures:  
    4V2A, 4V2B, 4V2C, 4V2D, 4V2E

  • PubMed Abstract: 
  • FLRTs are broadly expressed proteins with the unique property of acting as homophilic cell adhesion molecules and as heterophilic repulsive ligands of Unc5/Netrin receptors. How these functions direct cell behavior and the molecular mechanisms involved r ...

    FLRTs are broadly expressed proteins with the unique property of acting as homophilic cell adhesion molecules and as heterophilic repulsive ligands of Unc5/Netrin receptors. How these functions direct cell behavior and the molecular mechanisms involved remain largely unclear. Here we use X-ray crystallography to reveal the distinct structural bases for FLRT-mediated cell adhesion and repulsion in neurons. We apply this knowledge to elucidate FLRT functions during cortical development. We show that FLRTs regulate both the radial migration of pyramidal neurons, as well as their tangential spread. Mechanistically, radial migration is controlled by repulsive FLRT2-Unc5D interactions, while spatial organization in the tangential axis involves adhesive FLRT-FLRT interactions. Further, we show that the fundamental mechanisms of FLRT adhesion and repulsion are conserved between neurons and vascular endothelial cells. Our results reveal FLRTs as powerful guidance factors with structurally encoded repulsive and adhesive surfaces.


    Organizational Affiliation

    Max Planck Institute of Neurobiology, Am Klopferspitz 18, 82152 Martinsried, Germany; Munich Cluster for Systems Neurology (SyNergy), 80336 Munich, Germany. Electronic address: rklein@neuro.mpg.de.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NETRIN RECEPTOR UNC5A A303Homo sapiensMutation(s): 0 
Gene Names: UNC5AKIAA1976UNC5H1
Find proteins for Q6ZN44 (Homo sapiens)
Explore Q6ZN44 
Go to UniProtKB:  Q6ZN44
NIH Common Fund Data Resources
PHAROS:  Q6ZN44
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAG
Query on NAG

Download Ideal Coordinates CCD File 
A
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.344 
  • R-Value Work: 0.327 
  • R-Value Observed: 0.328 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 25.83α = 90
b = 87.77β = 90
c = 133.82γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
xia2data reduction
XDSdata reduction
xia2data scaling
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-11-05
    Type: Initial release
  • Version 1.1: 2015-07-22
    Changes: Database references
  • Version 1.2: 2019-10-30
    Changes: Advisory, Data collection, Derived calculations, Other
  • Version 1.3: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary