4UTI

XenA - oxidized - Y183F variant in complex with coumarin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.099 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.125 

wwPDB Validation 3D Report Full Report


This is version 2.1 of the entry. See complete history

Literature

Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase

Werther, T.Wahlefeld, S.Salewski, J.Kuhlmann, U.Zebger, I.Hildebrandt, P.Dobbek, H.

(2017) Nat Commun 8: 16084


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADH:flavin oxidoreductase
A
365Pseudomonas putidaMutation(s): 1 
Gene Names: xenA
Find proteins for Q3ZDM6 (Pseudomonas putida)
Go to UniProtKB:  Q3ZDM6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
COU
Query on COU

Download SDF File 
Download CCD File 
A
COUMARIN
2H-1-BENZOPYRAN-2-ONE
C9 H6 O2
ZYGHJZDHTFUPRJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.099 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.125 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 57.870α = 90.00
b = 83.397β = 90.00
c = 156.366γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-05
    Type: Initial release
  • Version 1.1: 2017-08-16
    Type: Database references
  • Version 2.0: 2017-08-23
    Type: Atomic model, Database references, Source and taxonomy, Structure summary
  • Version 2.1: 2018-04-04
    Type: Data collection