4UDF

STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 2.2 of the entry. See complete history

Literature

Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies.

Shakeel, S.Westerhuis, B.M.Ora, A.Koen, G.Bakker, A.Q.Claassen, Y.Wagner, K.Beaumont, T.Wolthers, K.C.Butcher, S.J.

(2015) J. Virol. 89: 9571-9580


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein VP3
1A, 1E, 1I, 1M, 1Q, 1U, 1Y, 12, 16, 2A, 2E, 2I, 2M, 2Q, 2U, 2Y, 22, 26, 3A, 3E, 3I, 3M, 3Q, 3U, 3Y, 32, 36, 4A, 4E, 4I, 4M, 4Q, 4U, 4Y, 42, 46, 5A, 5E, 5I, 5M, 5Q, 5U, 5Y, 52, 56, 6A, 6E, 6I, 6M, 6Q, 6U, 6Y, 62, 66, 7A, 7E, 7I, 7M, 7Q, 7U
183Human parechovirus 1 (strain Harris)Mutation(s): 0 
Find proteins for Q66578 (Human parechovirus 1 (strain Harris))
Go to UniProtKB:  Q66578
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein VP0
1B, 1F, 1J, 1N, 1R, 1V, 1Z, 13, 17, 2B, 2F, 2J, 2N, 2R, 2V, 2Z, 23, 27, 3B, 3F, 3J, 3N, 3R, 3V, 3Z, 33, 37, 4B, 4F, 4J, 4N, 4R, 4V, 4Z, 43, 47, 5B, 5F, 5J, 5N, 5R, 5V, 5Z, 53, 57, 6B, 6F, 6J, 6N, 6R, 6V, 6Z, 63, 67, 7B, 7F, 7J, 7N, 7R, 7V
229Human parechovirus 1 (strain Harris)Mutation(s): 0 
Find proteins for Q66578 (Human parechovirus 1 (strain Harris))
Go to UniProtKB:  Q66578
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
HUMAN MONOCLONAL ANTIBODY
1C, 1G, 1K, 1O, 1S, 1W, 10, 14, 18, 2C, 2G, 2K, 2O, 2S, 2W, 20, 24, 28, 3C, 3G, 3K, 3O, 3S, 3W, 30, 34, 38, 4C, 4G, 4K, 4O, 4S, 4W, 40, 44, 48, 5C, 5G, 5K, 5O, 5S, 5W, 50, 54, 58, 6C, 6G, 6K, 6O, 6S, 6W, 60, 64, 68, 7C, 7G, 7K, 7O, 7S, 7W
109N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
HUMAN MONOCLONAL ANTIBODY
1D, 1H, 1L, 1P, 1T, 1X, 11, 15, 19, 2D, 2H, 2L, 2P, 2T, 2X, 21, 25, 29, 3D, 3H, 3L, 3P, 3T, 3X, 31, 35, 39, 4D, 4H, 4L, 4P, 4T, 4X, 41, 45, 49, 5D, 5H, 5L, 5P, 5T, 5X, 51, 55, 59, 6D, 6H, 6L, 6P, 6T, 6X, 61, 65, 69, 7D, 7H, 7L, 7P, 7T, 7X
122N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-07-22
    Type: Initial release
  • Version 1.1: 2015-09-02
    Type: Database references, Other
  • Version 1.2: 2015-09-16
    Type: Other
  • Version 2.0: 2017-08-30
    Type: Advisory, Atomic model, Data collection, Refinement description
  • Version 2.1: 2018-01-24
    Type: Database references
  • Version 2.2: 2018-10-03
    Type: Data collection, Derived calculations