4U6O | pdb_00004u6o

STRUCTURE OF THE CAP-BINDING DOMAIN OF INFLUENZA VIRUS POLYMERASE SUBUNIT PB2

PDB DOI: https://doi.org/10.2210/pdb4U6O/pdb

Classification: TRANSCRIPTION
Organism(s): Influenza A virus (A/Puerto Rico/8/1934(H1N1))
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-07-29 Released: 2015-10-07
Deposition Author(s): Fukushima, K., Takimoto-Kamimura, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.227 (Depositor), 0.230 (DCC)
R-Value Work:
0.209 (Depositor), 0.210 (DCC)
R-Value Observed:
0.210 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

STRUCTURE OF THE CAP-BINDING DOMAIN OF INFLUENZA VIRUS POLYMERASE SUBUNIT PB2

Fukushima, K., Takimoto-Kamimura, M.

To be published.

Macromolecule Content

Total Structure Weight: 37.97 kDa
Atom Count: 3,012
Modeled Residue Count: 322
Deposited Residue Count: 332
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Polymerase basic protein 2	A, B	166	Influenza A virus (A/Puerto Rico/8/1934(H1N1))	Mutation(s): 0 Gene Names: PB2
UniProt
Find proteins for P03428 (Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)) Explore P03428 Go to UniProtKB: P03428
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P03428
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.227 (Depositor), 0.230 (DCC)
R-Value Work: 0.209 (Depositor), 0.210 (DCC)
R-Value Observed: 0.210 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.218	α = 90
b = 64.377	β = 91.04
c = 64.765	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data reduction
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-10-07

Deposition Author(s):

Takimoto-Kamimura, M.

Revision History (Full details and data files)

Version 1.0: 2015-10-07
Type: Initial release
Version 1.1: 2017-08-30
Changes: Data collection, Derived calculations
Version 1.2: 2017-10-04
Changes: Data collection
Version 1.3: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.