4U6G

Crystal structure of 10E8 Fab in complex with a hydrocarbon-stapled HIV-1 gp41 MPER peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.2012 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Fidelity and Neutralizing Antibody Binding Capacity of Hydrocarbon-Stapled HIV-1 Antigens

Bird, G.H.Irimia, A.Ofek, G.Kwong, P.D.Wilson, I.A.Walensky, L.D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
10E8 Fab Heavy Chain
H, A
236N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
10E8 Fab Light Chain
L, B
215N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
SAH-MPER(662-683KKK)(B,q)
P, C
17Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: env
Find proteins for I3VHW6 (Human immunodeficiency virus 1)
Go to UniProtKB:  I3VHW6
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
DIV
Query on DIV
C, P
D-PEPTIDE LINKINGC5 H11 N O2

--

MK8
Query on MK8
C, P
L-peptide linkingC7 H15 N O2LEU
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.2012 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.225 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 68.562α = 90.00
b = 126.317β = 90.00
c = 129.875γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
DENZOdata reduction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-03
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Database references, Derived calculations, Other, Refinement description, Source and taxonomy