4TZU

Crystal Structure of Murine Cereblon in Complex with Pomalidomide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Structural Basis for Responsiveness to Thalidomide-Analog Drugs Defined by the Crystal Structure of the Human Cereblon:DDB1:Lenalidomide Complex

Chamberlain, P.P.Wang, M.Riley, M.Delker, S.Ito, T.Hideki, A.Mori, T.Handa, H.Hakoshima, T.Daniel, T.O.Cathers, B.E.Lopez-Girona, A.Miller, K.Carmel, G.Pagarigan, B.Leon, B.Rychak, E.Corral, L.Ren, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein cereblon
A, B, C, D
108Mus musculusMutation(s): 0 
Gene Names: Crbn
Find proteins for Q8C7D2 (Mus musculus)
Go to UniProtKB:  Q8C7D2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Y70
Query on Y70

Download SDF File 
Download CCD File 
A, B, C, D
S-Pomalidomide
C13 H11 N3 O4
UVSMNLNDYGZFPF-QMMMGPOBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.196 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 143.340α = 90.00
b = 143.340β = 90.00
c = 143.340γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-08-06
    Type: Initial release
  • Version 2.0: 2017-09-27
    Type: Atomic model, Database references, Derived calculations, Other, Refinement description, Source and taxonomy