4TT1

Crystal structure of fragment 1600-1733 of HSV1 UL36, native


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Insights into Herpesvirus Tegument Organization from Structural Analyses of the 970 Central Residues of HSV-1 UL36 Protein.

Scrima, N.Lepault, J.Boulard, Y.Pasdeloup, D.Bressanelli, S.Roche, S.

(2015) J.Biol.Chem. 290: 8820-8833

  • DOI: 10.1074/jbc.M114.612838
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The tegument of all herpesviruses contains a capsid-bound large protein that is essential for multiple viral processes, including capsid transport, decapsidation at the nuclear pore complex, particle assembly, and secondary envelopment, through mecha ...

    The tegument of all herpesviruses contains a capsid-bound large protein that is essential for multiple viral processes, including capsid transport, decapsidation at the nuclear pore complex, particle assembly, and secondary envelopment, through mechanisms that are still incompletely understood. We report here a structural characterization of the central 970 residues of this protein for herpes simplex virus type 1 (HSV-1 UL36, 3164 residues). This large fragment is essentially a 34-nm-long monomeric fiber. The crystal structure of its C terminus shows an elongated domain-swapped dimer. Modeling and molecular dynamics simulations give a likely molecular organization for the monomeric form and extend our findings to alphaherpesvirinae. Hence, we propose that an essential feature of UL36 is the existence in its central region of a stalk capable of connecting capsid and membrane across the tegument and that the ability to switch between monomeric and dimeric forms may help UL36 fulfill its multiple functions.


    Organizational Affiliation

    From the Institute for Integrative Biology of the Cell (I2BC), 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, stephane.roche@vms.cnrs-gif.fr.,From the Institute for Integrative Biology of the Cell (I2BC), 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, the Institute of Biology and Technologies of Saclay, Commissariat à l'Energie Atomique, 91191 Gif-sur-Yvette, and.,From the Institute for Integrative Biology of the Cell (I2BC), 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette.,the Faculté de Pharmacie, INSERM UMR 984, 5 Rue J. B. Clément, 92290 Châtenay-Malabry, France.,From the Institute for Integrative Biology of the Cell (I2BC), 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette, stephane.bressanelli@vms.cnrs-gif.fr.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Deneddylase
A, B
138Human herpesvirus 1 (strain 17)Mutation(s): 0 
EC: 3.4.19.12, 3.4.22.-
Find proteins for P10220 (Human herpesvirus 1 (strain 17))
Go to UniProtKB:  P10220
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.201 
  • Space Group: P 61 2 2
Unit Cell:
Length (Å)Angle (°)
a = 110.217α = 90.00
b = 110.217β = 90.00
c = 159.939γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-02-18
    Type: Initial release
  • Version 1.1: 2015-02-25
    Type: Database references
  • Version 1.2: 2015-04-15
    Type: Database references