Download MendeleyStructure of tau peptide in complex with Tau5 antibody Fab fragment
Cehlar, O., Skrabana, R., Novak, M.To be published.
4TQE | pdb_00004tqe
Structure of tau peptide in complex with Tau5 antibody Fab fragment
- PDB DOI: https://doi.org/10.2210/pdb4TQE/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus, Homo sapiens
- Mutation(s): No
- Deposited: 2014-06-11 Released: 2015-07-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.197 (Depositor), 0.210 (DCC)
- R-Value Work: 0.151 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.153 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| If kappa light chain | A [auth L] | 218 | Mus musculus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for A2NHM3 (Mus musculus) Explore A2NHM3 Go to UniProtKB: A2NHM3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A2NHM3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Fab heavy chain | B [auth H] | 222 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Microtubule-associated protein tau | C [auth A] | 16 | Homo sapiens | Mutation(s): 0 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P10636 (Homo sapiens) Explore P10636 Go to UniProtKB: P10636 | |||||
PHAROS: P10636 GTEx: ENSG00000186868 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P10636 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGE Query on PGE | M [auth H] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | D [auth L], E [auth L], F [auth L], G [auth L], K [auth H] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| NA Query on NA | H [auth L], I [auth L], J [auth L], L [auth H] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.197 (Depositor), 0.210 (DCC)
- R-Value Work: 0.151 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.153 (Depositor)
Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 124.865 | α = 90 |
| b = 59.732 | β = 112.76 |
| c = 71.041 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| PHASER | phasing |
| XSCALE | data scaling |
Entry History
Deposition Data
- Released Date: 2015-07-29 Deposition Author(s): Cehlar, O., Skrabana, R., Novak, M.
Revision History (Full details and data files)
- Version 1.0: 2015-07-29
Type: Initial release - Version 1.1: 2018-03-07
Changes: Data collection - Version 1.2: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.3: 2024-10-09
Changes: Structure summary
