4S1V | pdb_00004s1v

Crystal structure of phosphoglycerate oxidoreductase from Vibrio Cholerae o395

• PDB DOI: https://doi.org/10.2210/pdb4S1V/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Vibrio cholerae O395
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-01-15 Released: 2015-01-28 
• Deposition Author(s): Tarique, K.F., Rehman, S.A.A., Devi, S., Gourinath, S.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.243 (Depositor), 0.241 (DCC) 
• R-Value Work: 
  0.202 (Depositor), 0.203 (DCC) 
• R-Value Observed: 
  0.204 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of Phosphoglycerate Oxidoreductase from Vibrio Cholerae O395

Tarique, K.F., Rehman, S.A.A., Devi, S., Gourinath, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 146.48 kDa 
• Atom Count: 10,222 
• Modeled Residue Count: 1,257 
• Deposited Residue Count: 1,328 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
D-3-phosphoglycerate dehydrogenase-related protein	A [auth D], B [auth A], C [auth B], D [auth C]	332	Vibrio cholerae O395	Mutation(s): 0  Gene Names: VC0395_0573, VC395_A0682 EC: 1.1.1.95
UniProt
Find proteins for A0A0H2UKZ7 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A0A0H2UKZ7  Go to UniProtKB:  A0A0H2UKZ7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.243 (Depositor), 0.241 (DCC) 
• R-Value Work:  0.202 (Depositor), 0.203 (DCC) 
• R-Value Observed: 0.204 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 51.916	α = 64.39
b = 83.258	β = 81.94
c = 85.986	γ = 76.03

Software Package:

Software Name	Purpose
MAR345dtb	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-01-28 
Deposition Author(s): Tarique, K.F., Rehman, S.A.A., Devi, S., Gourinath, S.

Revision History  

• Version 1.0: 2015-01-28
  Type: Initial release
  
• Version 1.1: 2023-09-20
  Changes: Data collection, Database references, Refinement description