4RZW

Crystal structure of BRAF (R509H) kinase domain bound to AZ628


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.493 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.247 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

An integrated model of RAF inhibitor action predicts inhibitor activity against oncogenic BRAF signaling

Karoulia, Z.Wu, Y.Ahmed, T.A.Qisheng, X.Bollard, J.Krepler, C.Wu, X.Zhang, C.Bollag, G.Herlym, M.Fagin, J.A.Lujambio, A.Gavathiotis, E.Poulikakos, P.I.

(2016) Cancer Cell 30: 1-14


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase B-raf
A, B
281Homo sapiensMutation(s): 17 
Gene Names: BRAF (BRAF1, RAFB1)
EC: 2.7.11.1
Find proteins for P15056 (Homo sapiens)
Go to Gene View: BRAF
Go to UniProtKB:  P15056
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B1E
Query on B1E

Download SDF File 
Download CCD File 
A, B
3-(2-cyanopropan-2-yl)-N-{4-methyl-3-[(3-methyl-4-oxo-3,4-dihydroquinazolin-6-yl)amino]phenyl}benzamide
C27 H25 N5 O2
ZGBGPEDJXCYQPH-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
B1EIC50: 2640 nM (94) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.493 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.247 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 86.077α = 90.00
b = 114.823β = 90.00
c = 56.444γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data collection
HKL-3000data scaling
PHASERphasing
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-08-10
    Type: Initial release