4RZV

Crystal structure of the BRAF (R509H) kinase domain monomer bound to Vemurafenib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

An integrated model of RAF inhibitor action predicts inhibitor activity against oncogenic BRAF signaling

Karoulia, Z.Wu, Y.Ahmed, T.A.Qisheng, X.Bollard, J.Krepler, C.Wu, X.Zhang, C.Bollag, G.Herlym, M.Fagin, J.A.Lujambio, A.Gavathiotis, E.Poulikakos, P.I.

(2016) Cancer Cell 30: 1-14


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase B-rafA, B281Homo sapiensMutation(s): 17 
Gene Names: BRAFBRAF1RAFB1
EC: 2.7.11.1
Find proteins for P15056 (Homo sapiens)
Explore P15056 
Go to UniProtKB:  P15056
NIH Common Fund Data Resources
PHAROS  P15056
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
032
Query on 032

Download CCD File 
A, B
N-(3-{[5-(4-chlorophenyl)-1H-pyrrolo[2,3-b]pyridin-3-yl]carbonyl}-2,4-difluorophenyl)propane-1-sulfonamide
C23 H18 Cl F2 N3 O3 S
GPXBXXGIAQBQNI-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
032IC50:  150   nM  BindingDB
032EC50:  601   nM  BindingDB
032IC50:  6.900000095367432   nM  BindingDB
032EC50:  2290   nM  BindingDB
032IC50:  31   nM  BindingDB
032IC50:  34   nM  BindingDB
032IC50:  33   nM  BindingDB
032IC50:  33000   nM  BindingDB
032EC50:  794   nM  BindingDB
032IC50:  119   nM  BindingDB
032IC50:  23   nM  BindingDB
032IC50:  100   nM  BindingDB
032IC50:  6.099999904632568   nM  BindingDB
032IC50:  21   nM  BindingDB
032IC50:  20   nM  BindingDB
032IC50:  17   nM  BindingDB
032IC50:  280   nM  BindingDB
032IC50:  1140   nM  BindingDB
032IC50:  4   nM  BindingDB
032IC50:  260   nM  BindingDB
032IC50:  59   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.207 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.975α = 90
b = 71.698β = 90
c = 243.281γ = 90
Software Package:
Software NamePurpose
HKL-3000data collection
PHASERphasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-08-10
    Type: Initial release
  • Version 1.1: 2017-10-04
    Changes: Structure summary