4RZA | pdb_00004rza

Pre-mRNA-splicing factor 38A AS 1-205

PDB DOI: https://doi.org/10.2210/pdb4RZA/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-12-19 Released: 2015-12-02
Deposition Author(s): Schuetze, T., Ulrich, A., Wahl, M.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.208 (Depositor), 0.208 (DCC)
R-Value Work:
0.158 (Depositor), 0.162 (DCC)
R-Value Observed:
0.160 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4RZA

This is version 1.2 of the entry. See complete history.

Literature

The N-terminal domain of the unusual SR protein hPrp38 is an interaction hub in the spliceosome

Schuetze, T., Apelt, L., Ulrich, A., Weber, G., Bartlick, N., Stelzl, U., Wahl, M.C.

To be published.

Macromolecule Content

Total Structure Weight: 24.22 kDa
Atom Count: 1,616
Modeled Residue Count: 179
Deposited Residue Count: 205
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pre-mRNA-splicing factor 38A	A	205	Homo sapiens	Mutation(s): 0 Gene Names: PRPF38A
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NAV1 (Homo sapiens) Explore Q8NAV1 Go to UniProtKB: Q8NAV1
PHAROS: Q8NAV1 GTEx: ENSG00000134748
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8NAV1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.208 (Depositor), 0.208 (DCC)
R-Value Work: 0.158 (Depositor), 0.162 (DCC)
R-Value Observed: 0.160 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.612	α = 90
b = 59.433	β = 90
c = 68.805	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2015-12-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-12-02
Type: Initial release
Version 1.1: 2016-09-21
Changes: Other
Version 1.2: 2024-02-28
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.