4RZ7

Crystal Structure of PVX_084705 with bound PCI32765


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.351 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal Structure of PVX_084705 with bound PCI32765

Jiang, D.Q.Tempel, W.Loppnau, P.Graslund, S.He, H.Seitova, A.Arrowsmith, C.H.Edwards, A.M.Bountra, C.Hui, R.Hutchinson, A.El Bakkouri, M.Amani, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
cGMP-dependent protein kinase, putative
A
847Plasmodium vivax (strain Salvador I)Mutation(s): 0 
Find proteins for A5K0N4 (Plasmodium vivax (strain Salvador I))
Go to UniProtKB:  A5K0N4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1E8
Query on 1E8

Download SDF File 
Download CCD File 
A
1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one
Imbruvica, PCI-32765
C25 H24 N6 O2
XYFPWWZEPKGCCK-GOSISDBHSA-N
 Ligand Interaction
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.351 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.194 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 192.556α = 90.00
b = 117.422β = 95.26
c = 68.219γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
SCALEPACKdata scaling
DENZOdata reduction
PDB_EXTRACTdata extraction
APSdata collection
PHENIXrefinement
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2015-01-14
    Type: Initial release
  • Version 1.1: 2015-03-11
    Type: Non-polymer description
  • Version 1.2: 2015-06-24
    Type: Database references, Structure summary
  • Version 1.3: 2015-07-22
    Type: Structure summary
  • Version 1.4: 2017-11-22
    Type: Advisory, Refinement description